View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_54 (Length: 248)
Name: NF2717_low_54
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 34506218 - 34506006
Alignment:
| Q |
1 |
cccgcaaaagaaacaaacaaaatgatgacacaaatggtaatatattcactcatcatatgtatgtgtgtgagtctaagacggtaaacaagaacaacgtaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |
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| T |
34506218 |
cccgcaaaagaaacaaacaaaatgatgacacaaatggtaatat--------------tatatgtgtgtgagtctaagacagtaaacaagaacaacgtaac |
34506133 |
T |
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| Q |
101 |
tattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcatgaatcatacaagacaatgattcccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506132 |
tattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcatgaatcatacaagacaatgattcccac |
34506033 |
T |
|
| Q |
201 |
atgtttagactcaatgaatctcccaca |
227 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
34506032 |
atgtttagactcaatgaatcacccaca |
34506006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 34516265 - 34516136
Alignment:
| Q |
98 |
aactattacccggaagaagacagtagacattggttctttcctagaaaagcttgtagtgacattcggaaccgacgcatgaatcatacaagacaatgattcc |
197 |
Q |
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|||||||||| |||| | |||||||||| || ||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||||||| |
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| T |
34516265 |
aactattacctggaaaatcacagtagacactgattctttcctagaaaagcttgtagtggcatttggtaccgatgcatgaatcatacaagacaatgattcc |
34516166 |
T |
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| Q |
198 |
cacatgtttagactcaatgaatctcccaca |
227 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
34516165 |
cacatgtttagactcaatgaatcacccaca |
34516136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 4690036 - 4690107
Alignment:
| Q |
156 |
acattcggaaccgacgcatgaatcatacaagacaatgattcccacatgtttagactcaatgaatctcccaca |
227 |
Q |
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||||| || |||||||||||||||||||| |||| ||||||||||||||| ||||||| |||||| |||||| |
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| T |
4690036 |
acattgggcaccgacgcatgaatcatacacgacagtgattcccacatgttcagactcagtgaatcacccaca |
4690107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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