View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_low_6 (Length: 635)

Name: NF2717_low_6
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_low_6
NF2717_low_6
[»] chr5 (27 HSPs)
chr5 (86-441)||(10008537-10008892)
chr5 (497-632)||(10008348-10008483)
chr5 (1-51)||(10008927-10008977)
chr5 (497-574)||(5899776-5899855)
chr5 (501-579)||(26009126-26009205)
chr5 (497-568)||(1981985-1982058)
chr5 (497-572)||(21062190-21062267)
chr5 (396-438)||(24468315-24468357)
chr5 (396-441)||(14011317-14011362)
chr5 (396-441)||(27487887-27487932)
chr5 (392-440)||(21155983-21156031)
chr5 (501-574)||(13739543-13739618)
chr5 (396-438)||(13332332-13332374)
chr5 (395-441)||(16594402-16594448)
chr5 (497-571)||(21575637-21575713)
chr5 (396-441)||(1293112-1293157)
chr5 (396-441)||(1981890-1981934)
chr5 (396-441)||(13089808-13089853)
chr5 (396-441)||(13739450-13739495)
chr5 (392-441)||(15479465-15479513)
chr5 (497-547)||(33647654-33647706)
chr5 (396-441)||(41639761-41639806)
chr5 (393-441)||(1764221-1764268)
chr5 (396-436)||(27546326-27546366)
chr5 (497-566)||(27546433-27546503)
chr5 (393-441)||(28306159-28306206)
chr5 (497-574)||(34379556-34379635)
[»] chr2 (15 HSPs)
chr2 (497-570)||(37468158-37468230)
chr2 (497-579)||(11084818-11084903)
chr2 (396-441)||(37468284-37468329)
chr2 (497-574)||(40209957-40210036)
chr2 (386-440)||(11965783-11965837)
chr2 (396-441)||(7438568-7438613)
chr2 (497-574)||(7438671-7438750)
chr2 (394-441)||(42421925-42421971)
chr2 (545-579)||(1069320-1069354)
chr2 (395-441)||(15260306-15260352)
chr2 (399-441)||(26481116-26481158)
chr2 (396-441)||(9207590-9207634)
chr2 (396-441)||(41042254-41042298)
chr2 (396-441)||(43057064-43057109)
chr2 (390-438)||(7664098-7664146)
[»] chr3 (24 HSPs)
chr3 (497-574)||(36639204-36639283)
chr3 (497-574)||(23553480-23553559)
chr3 (502-574)||(25348230-25348304)
chr3 (501-574)||(23553667-23553742)
chr3 (497-574)||(31350495-31350574)
chr3 (386-441)||(34608082-34608136)
chr3 (497-569)||(40367711-40367785)
chr3 (396-441)||(19150345-19150390)
chr3 (501-574)||(45292918-45292993)
chr3 (497-571)||(37143206-37143280)
chr3 (516-571)||(37788569-37788624)
chr3 (497-574)||(41610418-41610497)
chr3 (497-574)||(43898666-43898745)
chr3 (497-571)||(50886295-50886369)
chr3 (395-441)||(33389007-33389053)
chr3 (497-574)||(49875897-49875975)
chr3 (396-441)||(23553615-23553660)
chr3 (396-441)||(45293055-45293100)
chr3 (392-441)||(49875792-49875841)
chr3 (497-574)||(50886497-50886576)
chr3 (396-441)||(52963342-52963387)
chr3 (393-441)||(26014809-26014856)
chr3 (501-574)||(33389114-33389189)
chr3 (397-441)||(49780765-49780809)
[»] chr7 (16 HSPs)
chr7 (497-569)||(9792871-9792945)
chr7 (497-576)||(31289250-31289331)
chr7 (499-568)||(41750209-41750280)
chr7 (497-574)||(2819356-2819435)
chr7 (502-572)||(24287231-24287302)
chr7 (498-571)||(11908647-11908722)
chr7 (501-574)||(11778685-11778760)
chr7 (396-438)||(9792766-9792808)
chr7 (395-441)||(38861095-38861140)
chr7 (395-441)||(48814834-48814880)
chr7 (396-441)||(9363387-9363432)
chr7 (396-441)||(12007212-12007257)
chr7 (396-441)||(43159601-43159646)
chr7 (396-441)||(47448826-47448871)
chr7 (538-574)||(2069403-2069439)
chr7 (396-436)||(41750115-41750155)
[»] scaffold0481 (1 HSPs)
scaffold0481 (497-574)||(1090-1169)
[»] chr1 (22 HSPs)
chr1 (497-574)||(5466224-5466303)
chr1 (501-574)||(38762205-38762280)
chr1 (395-441)||(49931552-49931598)
chr1 (396-441)||(16583087-16583132)
chr1 (497-574)||(702376-702455)
chr1 (501-574)||(4604718-4604793)
chr1 (394-441)||(19947767-19947814)
chr1 (516-579)||(40809610-40809673)
chr1 (394-441)||(49020430-49020477)
chr1 (396-438)||(5980863-5980905)
chr1 (501-571)||(5980960-5981035)
chr1 (396-441)||(649768-649813)
chr1 (396-441)||(9566987-9567032)
chr1 (501-547)||(16582979-16583027)
chr1 (396-441)||(30467552-30467597)
chr1 (396-441)||(30535991-30536036)
chr1 (396-441)||(35369700-35369744)
chr1 (497-574)||(35414465-35414544)
chr1 (396-441)||(42824454-42824499)
chr1 (396-441)||(45333570-45333614)
chr1 (396-441)||(48983694-48983739)
chr1 (516-573)||(49804826-49804883)
[»] scaffold0432 (1 HSPs)
scaffold0432 (396-441)||(6546-6591)
[»] chr4 (22 HSPs)
chr4 (392-441)||(14443194-14443243)
chr4 (523-574)||(54128176-54128228)
chr4 (497-547)||(51734549-51734601)
chr4 (396-441)||(51734659-51734704)
chr4 (393-441)||(3078934-3078982)
chr4 (516-572)||(12706288-12706344)
chr4 (397-441)||(21014055-21014099)
chr4 (530-574)||(42135268-42135312)
chr4 (497-569)||(54909426-54909500)
chr4 (396-434)||(7146153-7146191)
chr4 (395-441)||(46634099-46634144)
chr4 (387-441)||(51255737-51255791)
chr4 (396-441)||(54128052-54128098)
chr4 (396-441)||(20760255-20760300)
chr4 (396-441)||(20766646-20766691)
chr4 (392-441)||(32012892-32012941)
chr4 (497-574)||(54342885-54342964)
chr4 (396-441)||(54909323-54909368)
chr4 (396-441)||(56474790-56474835)
chr4 (393-441)||(5622455-5622502)
chr4 (523-574)||(23719410-23719462)
chr4 (522-574)||(31178705-31178757)
[»] chr8 (24 HSPs)
chr8 (394-441)||(42733591-42733638)
chr8 (516-574)||(14127369-14127427)
chr8 (497-547)||(16700863-16700915)
chr8 (497-547)||(42733483-42733535)
chr8 (393-441)||(7271849-7271896)
chr8 (501-579)||(7612093-7612173)
chr8 (393-441)||(26026893-26026941)
chr8 (394-441)||(5601013-5601060)
chr8 (394-441)||(5639560-5639607)
chr8 (394-441)||(23754733-23754780)
chr8 (394-441)||(25987813-25987860)
chr8 (523-572)||(12171981-12172031)
chr8 (399-441)||(12172143-12172185)
chr8 (523-572)||(12416409-12416459)
chr8 (399-441)||(12416571-12416613)
chr8 (392-441)||(13106473-13106522)
chr8 (396-441)||(33100495-33100540)
chr8 (396-441)||(35792069-35792114)
chr8 (396-441)||(40649450-40649495)
chr8 (522-574)||(1775437-1775489)
chr8 (397-433)||(9630136-9630172)
chr8 (529-577)||(10839507-10839555)
chr8 (397-441)||(10839508-10839552)
chr8 (528-572)||(39199887-39199931)
[»] chr6 (15 HSPs)
chr6 (394-441)||(11635561-11635608)
chr6 (396-441)||(8505800-8505845)
chr6 (497-547)||(23632553-23632605)
chr6 (393-441)||(18065116-18065164)
chr6 (396-440)||(23632664-23632708)
chr6 (501-571)||(28982533-28982605)
chr6 (393-441)||(34383884-34383932)
chr6 (516-574)||(11113904-11113962)
chr6 (396-441)||(2242048-2242093)
chr6 (400-441)||(5456876-5456917)
chr6 (396-433)||(25561963-25562000)
chr6 (396-433)||(26101477-26101514)
chr6 (392-441)||(33712316-33712365)
chr6 (497-571)||(5456742-5456818)
chr6 (397-441)||(24900776-24900820)
[»] scaffold0201 (1 HSPs)
scaffold0201 (392-441)||(8468-8517)
[»] scaffold0295 (1 HSPs)
scaffold0295 (497-574)||(6033-6112)
[»] scaffold1625 (1 HSPs)
scaffold1625 (519-574)||(671-726)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 86 - 441
Target Start/End: Complemental strand, 10008892 - 10008537
Alignment:
Q  86 ccatgtgttctagtcatattcttgttgttagtgagactcccccttttgtcaatgaacaatatatagattcattgaacaatatacacctacaaatatacaa 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10008892 ccatgtgttctagtcatattcttgttgttagtgagactcccccttttgtcaatgaacaatatacagattcattgaacaatatacacctacaaatatacaa 10008793  T
Q  186 gacataggcacgaatcaatttctggtgcttagtgaggtgtcggctaaattctcatttacatggtgctgtaactattgaattgtaaaaatttaaaaattat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  10008792 gacataggcacgaatcaatttctggtgcttagtgaggtgtcggctatattctcatttacatggtgctgtaaatattaaattgtaaaaatttaaaaattat 10008693  T
Q  286 gtgccagtttccttaaccatgtttttgttgttgtcgtgtctttgtctcttggttgtcaagatcactgaaccttttttgccttattcttcaagtgccaacg 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10008692 gtgccagtttccttaaccatgtttttgttgttgtcgtgtctttgtctcttggttgtcaagatcactgaaccttttttgccttattcttcaagtgccaacg 10008593  T
Q  386 tttatgatatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10008592 tttatgatatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 10008537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 497 - 632
Target Start/End: Complemental strand, 10008483 - 10008348
Alignment:
Q  497 attgttattgtccaataaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattccttttataccatattcatgattaa 596  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10008483 attgttattgtccaataaggagagaaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcatttcttttataccatattcatgattaa 10008384  T
Q  597 caaatagagtaaaactagtatattttccctcatggc 632  Q
    ||||||||||||||||||||||||||||||||||||    
T  10008383 caaatagagtaaaactagtatattttccctcatggc 10008348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10008977 - 10008927
Alignment:
Q  1 tatagcggccaatgatcactgatctgatgatattgtgtcagttcttatggc 51  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  10008977 tatagcggccaatgatcactgatatgatgatattgtggcagttcttatggc 10008927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 5899855 - 5899776
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||| |||||||||  ||||||||||||||| ||||||||| ||||||    ||||||||| |||||||||||||    
T  5899855 attgttattatccaataagaagagaggaaaaaaggtagtcactaaaattgtttgattttggttgtcaaaatatcattcct 5899776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 579
Target Start/End: Complemental strand, 26009205 - 26009126
Alignment:
Q  501 ttattgtccaataaggagaggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattccttttat 579  Q
    ||||||||||||||| | ||   ||||||||||||||||| |||||||| ||||| ||||| ||||||||||||| ||||    
T  26009205 ttattgtccaataagaaaagaggaaaaggttgtcactaaaagttgtttaaaattgattgtcaaaatatcattcctcttat 26009126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 1981985 - 1982058
Alignment:
Q  497 attgttattgtccaataaggagag--gaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatc 568  Q
    ||||||||||||||||||| ||||  ||||||||||||||| |||||||||||    |||||||| ||||||||    
T  1981985 attgttattgtccaataagaagagaagaaaaaaggttgtcattaaagttgtttgattttggttgttcaaatatc 1982058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 572
Target Start/End: Complemental strand, 21062267 - 21062190
Alignment:
Q  497 attgttattgtccaataaggaga--ggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattc 572  Q
    ||||||||||||||||||| |||  ||||||||| |||||  |||| ||||||| ||||| |||| ||||||||||||    
T  21062267 attgttattgtccaataagaagaaaggaaaaaagattgtcgttaaaattgtttaaaattgattgttcaaatatcattc 21062190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 438
Target Start/End: Complemental strand, 24468357 - 24468315
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtga 438  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  24468357 gagaaatgatatttgaacaaccatttttaaacaacttttgtga 24468315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 14011317 - 14011362
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||||||||||  |||||||||||||||||    
T  14011317 gagaaatgatatttgaacaatcattttgtaacaacttttgtgacaa 14011362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 27487887 - 27487932
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||||    
T  27487887 gagaaatgatatttgaacaatcaatttttaacaacttttgtgacaa 27487932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 21155983 - 21156031
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgaca 440  Q
    ||||||||||||||||| |||||| |||||||  |||||||||||||||    
T  21155983 atatgagaaatgatatttgaacaaccattttttgacaacttttgtgaca 21156031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 13739543 - 13739618
Alignment:
Q  501 ttattgtccaataaggag-aggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||  || | |||||||||||||| ||||| |||||||| | ||||||||| |||||||||||||    
T  13739543 ttattgtccaataaaaaggaagaaaaaaggttgtccctaaaagttgtttaaagttggttgtcaaaatatcattcct 13739618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 13332332 - 13332374
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtga 438  Q
    ||||||||||||| |||||| |||||||||| |||||||||||    
T  13332332 gagaaatgatatttgaacaaccatttttaaataacttttgtga 13332374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 16594448 - 16594402
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||| |||||  ||||||| |||||||||||||||||    
T  16594448 tgagaaatgatatttgaacatccattttttaacaacttttgtgacaa 16594402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 571
Target Start/End: Complemental strand, 21575713 - 21575637
Alignment:
Q  497 attgttattgtccaataagga--gaggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcatt 571  Q
    |||||||||||||| |||| |  ||||||||| | ||||||||||| |||||||| ||||||||||| ||||||||||    
T  21575713 attgttattgtccattaagaacggaggaaaaatg-ttgtcactaaatgttgtttaaaattggttgtcaaaatatcatt 21575637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 1293157 - 1293112
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | |||| ||||||| |||||||||||||||||    
T  1293157 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaa 1293112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 1981890 - 1981934
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||    
T  1981890 gagaaatgatatttgaacaaccatttttaaac-acttttgtgacaa 1981934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 13089853 - 13089808
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  13089853 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 13089808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 13739450 - 13739495
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||    
T  13739450 gagaaatgatattcgaacaaccactttcagacaacttttgtgacaa 13739495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 15479465 - 15479513
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||| ||||||||||||||  ||||||||| ||||||    
T  15479465 atatgagaaatgatatttgaacaatcattttt-tacaacttttatgacaa 15479513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 33647654 - 33647706
Alignment:
Q  497 attgttattgtccaataaggagag--gaaaaaaggttgtcactaaagttgttt 547  Q
    ||||||||| ||||||||| ||||  ||||||| |||||||||||||||||||    
T  33647654 attgttattatccaataagaagagaagaaaaaaagttgtcactaaagttgttt 33647706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 41639806 - 41639761
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||  ||||||||||||||  ||||||||||||||||    
T  41639806 gagaaatgatatctgaacaatcatttttttacaacttttgtgacaa 41639761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 1764221 - 1764268
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  1764221 tatgagaaatgatatttgaacaatcattttt-tacaacttctgtgacaa 1764268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 27546326 - 27546366
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgt 436  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  27546326 gagaaatgatgtttgaacaaccatttttaaacaacttttgt 27546366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 566
Target Start/End: Original strand, 27546433 - 27546503
Alignment:
Q  497 attgttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaata 566  Q
    ||||||||||| ||||  || ||||||||||||| ||||||| ||| ||||||| |||||||||||| ||||    
T  27546433 attgttattgttcaatgaaaagagaggaaaaaag-ttgtcacgaaaattgtttaaaattggttgtccgaata 27546503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 28306206 - 28306159
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  28306206 tatgagaaatgatatttgaacaaccattttt-tacaacttttgtgacaa 28306159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 34379556 - 34379635
Alignment:
Q  497 attgttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||  || |||||||| |||||||||| ||||| ||||||     ||||||||||||||||| ||||    
T  34379556 attgttattgtccaatgaaaagagaggaataaaggttgtctctaaatttgttttattatggttgtccaaatatcactcct 34379635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 497 - 570
Target Start/End: Complemental strand, 37468230 - 37468158
Alignment:
Q  497 attgttattgtccaataaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcat 570  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||| ||||||||||    
T  37468230 attgttattgtccaataag-agaggaaaaaaggttgtcacaaaagttgtttcaaattggttgtacaaatatcat 37468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 579
Target Start/End: Original strand, 11084818 - 11084903
Alignment:
Q  497 attgttattgtccaataagga--gaggaaaaaag-gttgtcactaaagttgtttacaattggttgtccaaatatcattccttttat 579  Q
    ||||||||||||| ||||| |  ||||||||||  |||||||||||||||||||| ||||| |||||||||||| |||||| ||||    
T  11084818 attgttattgtccgataagaaaagaggaaaaaaaagttgtcactaaagttgtttaaaattgattgtccaaatatgattcctcttat 11084903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 37468329 - 37468284
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  37468329 gagaaatgatatttgaagaatcatttttaaacaacttttgtgacaa 37468284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 40210036 - 40209957
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||||||||||||||||  |||||||||||||||||||| || | ||||||    |||||||||||||||||| ||||    
T  40210036 attgttattgtccaataagaagagaggaaaaaaggttgtcaatagaattgtttgattttggttgtccaaatatcactcct 40209957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 440
Target Start/End: Original strand, 11965783 - 11965837
Alignment:
Q  386 tttatgatatgagaaatgatattcgaacaatcatttttaaacaacttttgtgaca 440  Q
    |||||| |||||||||||||||| ||||||||| ||||  |||||||||||||||    
T  11965783 tttatgttatgagaaatgatatttgaacaatcactttttgacaacttttgtgaca 11965837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 7438568 - 7438613
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||    
T  7438568 gagaaatgatatttgaacaaccatttttaaacaacttttatgacaa 7438613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 7438671 - 7438750
Alignment:
Q  497 attgttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||  || ||||| ||||||||||||| ||||||||||||    ||||||||| |||||||| ||||    
T  7438671 attgttattgtccaatgaaaagagagaaaaaaaggttgtccctaaagttgttttattttggttgtcaaaatatcactcct 7438750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 42421971 - 42421925
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  42421971 atgagaaatgatattcgaacaaccattttt-tacaacttttgtgacaa 42421925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 545 - 579
Target Start/End: Original strand, 1069320 - 1069354
Alignment:
Q  545 tttacaattggttgtccaaatatcattccttttat 579  Q
    |||||||||||||||| ||||||||||||||||||    
T  1069320 tttacaattggttgtcgaaatatcattccttttat 1069354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 15260306 - 15260352
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||| |||||| || ||||| ||||||||||||||||    
T  15260306 tgagaaatgatatttgaacaaccacttttagacaacttttgtgacaa 15260352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 26481158 - 26481116
Alignment:
Q  399 aaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||| ||||||| |||||| |||||||||||||||||    
T  26481158 aaatgatatttgaacaattattttttaacaacttttgtgacaa 26481116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 9207590 - 9207634
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||    
T  9207590 gagaaatgatatttgaacaatcattttt-tacaacttttgtgacaa 9207634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 41042254 - 41042298
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||    
T  41042254 gagaaatgatatttgaacaaccattttt-aacaacttttgtgacaa 41042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 43057064 - 43057109
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| || |||| |||||||||||||||||    
T  43057064 gagaaatgatatttgaacaaccactttttaacaacttttgtgacaa 43057109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 7664146 - 7664098
Alignment:
Q  390 tgatatgagaaatgatattcgaacaatcatttttaaacaacttttgtga 438  Q
    ||||||||||||||||||| ||||||| ||||||  |||| ||||||||    
T  7664146 tgatatgagaaatgatatttgaacaattatttttggacaatttttgtga 7664098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 36639204 - 36639283
Alignment:
Q  497 attgttattgtccaata--aggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||||||||||||||  | |||||||||||| |||||| ||||||||||||  |||||||||||||||||||| ||||    
T  36639204 attgttattgtccaatagaaagagaggaaaaaatgttgtccctaaagttgtttgaaattggttgtccaaatatcactcct 36639283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 23553559 - 23553480
Alignment:
Q  497 attgttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||  || ||||| ||||||||||||||||||||||||||    |||||||||||||||||| ||||    
T  23553559 attgttattgtccaatgaaaagagagaaaaaaaggttgtcactaaagttgtttgattttggttgtccaaatatcactcct 23553480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 502 - 574
Target Start/End: Complemental strand, 25348304 - 25348230
Alignment:
Q  502 tattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||||||||  || |||||||||||||||||||||  |||||||||  |||||||||||||||||||| ||||    
T  25348304 tattgtccaatcaaaagagaggaaaaaaggttgtcaccgaagttgtttgtaattggttgtccaaatatcactcct 25348230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 23553742 - 23553667
Alignment:
Q  501 ttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||  || ||||| ||||||||||||||||||||||||||    |||||||||||||||||| ||||    
T  23553742 ttattgtccaatgaaaagagagaaaaaaaggttgtcactaaagttgtttgattttggttgtccaaatatcactcct 23553667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 31350574 - 31350495
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||  |||| ||||||| |||||||||||| ||||||   ||||||||||| |||||||||||||    
T  31350574 attgttattgtccaataaaaagagagaaaaaaagttgtcactaaaagttgttggaaattggttgtcaaaatatcattcct 31350495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 386 - 441
Target Start/End: Original strand, 34608082 - 34608136
Alignment:
Q  386 tttatgatatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  34608082 tttatgat-tgagaaatgatattcaaacaatcacttttagacaacttttgtgacaa 34608136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 569
Target Start/End: Original strand, 40367711 - 40367785
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatca 569  Q
    ||||||||| |||||||||  |||||||||||||||||||| || ||||||||    ||||||||||||||||||    
T  40367711 attgttattatccaataagaagagaggaaaaaaggttgtcaatagagttgtttgattttggttgtccaaatatca 40367785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 19150390 - 19150345
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | |||||||||||| |||||||||||||||||    
T  19150390 gagaaatgatatttgtacaatcattttttaacaacttttgtgacaa 19150345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 45292993 - 45292918
Alignment:
Q  501 ttattgtccaataagga--gaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||| |  |||||||||||||||||| || ||||||||    |||||||||||||||||| ||||    
T  45292993 ttattgtccaataagaaaagaggaaaaaaggttgtcaatagagttgtttgattttggttgtccaaatatcactcct 45292918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 571
Target Start/End: Original strand, 37143206 - 37143280
Alignment:
Q  497 attgttattgtccaataaggagaggaaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcatt 571  Q
    ||||||||||||||||||  ||||| ||||||||||||||| |||||||||   |||| |||||| ||||||||||    
T  37143206 attgttattgtccaataaaaagagg-aaaaaggttgtcactaaaagttgttggaaattagttgtcaaaatatcatt 37143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 571
Target Start/End: Original strand, 37788569 - 37788624
Alignment:
Q  516 gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcatt 571  Q
    |||||||||||| ||| |||||||| ||||||| |||||| ||| |||||||||||    
T  37788569 gagaggaaaaaatgttatcactaaaattgtttaaaattggctgttcaaatatcatt 37788624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 41610418 - 41610497
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcacta-aagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||||||||| |||||  |||| ||||||| |||||||||| |||||||||| |||| || ||| |||||||||||||    
T  41610418 attgttattgtctaataaaaagagagaaaaaatgttgtcactagaagttgtttaaaatttgtagtcaaaatatcattcct 41610497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 43898666 - 43898745
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||| |||  ||||||| ||||||| | ||||||||||| || | |||||| |||||||||||||    
T  43898666 attgttattgtccaataagaagatagaaaaaaagttgtcaatgaaagttgtttaaaaattgttgtcaaaatatcattcct 43898745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 571
Target Start/End: Original strand, 50886295 - 50886369
Alignment:
Q  497 attgttattgtccaataaggagaggaaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcatt 571  Q
    ||||||||||||||||||  ||||| ||||| ||||||||| ||||||||| | ||||| ||||| ||||||||||    
T  50886295 attgttattgtccaataaaaagagg-aaaaacgttgtcactgaaagttgttgaaaattgattgtcaaaatatcatt 50886369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 33389007 - 33389053
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||| |||||| || |||||||||| |||||||||||    
T  33389007 tgagaaatgatatttgaacaaccacttttaaacaatttttgtgacaa 33389053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 49875897 - 49875975
Alignment:
Q  497 attgttattgtccaat--aaggagaggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||  || ||||||||||||  ||||||||||| ||||||   ||||||||||| |||||||||||||    
T  49875897 attgttattgtccaatgaaaagagaggaaaaaa--ttgtcactaaaagttgttggaaattggttgtcaaaatatcattcct 49875975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 23553660 - 23553615
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||  | ||||||||||||||||||||||    
T  23553660 gagaaatgatatttgaacaactacttttaaacaacttttgtgacaa 23553615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 45293100 - 45293055
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||  |||||  ||||||||||||||||||||||||    
T  45293100 gagaaatgatatttaaacaactatttttaaacaacttttgtgacaa 45293055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 49875792 - 49875841
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||||  ||||  ||||||| |||||||||||||||||    
T  49875792 atatgagaaatgatattttaacatccattttttaacaacttttgtgacaa 49875841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 50886497 - 50886576
Alignment:
Q  497 attgttattgtccaataagga--gaggaaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||| |||||||||||||| |  ||||||||| |||||||||  |||||||| || ||||||||||| |||||||||||||    
T  50886497 attgctattgtccaataagaatggaggaaaaa-ggttgtcacccaaagttgtctaaaattggttgtcaaaatatcattcct 50886576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 52963387 - 52963342
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | |||| ||||||| |||||||||||||||||    
T  52963387 gagaaatgatatttgtacaaccattttttaacaacttttgtgacaa 52963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 26014809 - 26014856
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  26014809 tatgagaaatgatatttgaacaaccattttt-tacaacttttgtgacaa 26014856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 33389114 - 33389189
Alignment:
Q  501 ttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||| |||||||||  |||||||||||||||||||| || ||||||||    ||||||||| |||||||| ||||    
T  33389114 ttattatccaataagaagagaggaaaaaaggttgtcaatagagttgtttgattttggttgtcaaaatatcactcct 33389189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 49780809 - 49780765
Alignment:
Q  397 agaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||  |||||||||||||  ||||||||||||||||    
T  49780809 agaaatgatatttaaacaatcatttttgcacaacttttgtgacaa 49780765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 497 - 569
Target Start/End: Original strand, 9792871 - 9792945
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatca 569  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||    |||||||| |||||||||    
T  9792871 attgttattgtccaataagaagagaggaaaaaaggttgtcactaaagttgtttgattttggttgttcaaatatca 9792945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 497 - 576
Target Start/End: Complemental strand, 31289331 - 31289250
Alignment:
Q  497 attgttattgtccaataaggagag--gaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattccttt 576  Q
    ||||||||||||||||||| ||||  ||||||| ||||||| |||||||||||    |||||||||||||||||| ||||||    
T  31289331 attgttattgtccaataagaagagaagaaaaaaagttgtcattaaagttgtttgattttggttgtccaaatatcactccttt 31289250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 499 - 568
Target Start/End: Original strand, 41750209 - 41750280
Alignment:
Q  499 tgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatc 568  Q
    |||||||||||||||||  ||||||||||||||||||||||||| ||||||    |||||||| ||||||||    
T  41750209 tgttattgtccaataagaagagaggaaaaaaggttgtcactaaaattgtttgattttggttgttcaaatatc 41750280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 2819356 - 2819435
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcactaaag-ttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||  ||||| | ||||||||||| |||||||||||||    
T  2819356 attgttattgtccaataaaaagagaggaaaaaggttgtcactaaaaattgttgaaaattggttgtcaaaatatcattcct 2819435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 502 - 572
Target Start/End: Original strand, 24287231 - 24287302
Alignment:
Q  502 tattgtccaataaggagagg-aaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattc 572  Q
    |||||||||||||| ||||| |||||| ||| |||||| |||||||||||||| ||| | ||||||||||||    
T  24287231 tattgtccaataagaagagggaaaaaatgttatcactagagttgtttacaattagtttttcaaatatcattc 24287302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 571
Target Start/End: Complemental strand, 11908722 - 11908647
Alignment:
Q  498 ttgttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcatt 571  Q
    |||||||||||||||  || || |||||||||  || ||||| |||||||||| |||||||||| |||||||||||    
T  11908722 ttgttattgtccaatgaaaagataggaaaaaatattatcactgaagttgtttaaaattggttgttcaaatatcatt 11908647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 11778685 - 11778760
Alignment:
Q  501 ttattgtccaataaggag-aggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||| || | |||||||  ||||| ||||| |||||||| ||||||||||| |||||||||||||    
T  11778685 ttattgtccaataagaaggaagaaaaaaaattgtccctaaaagttgtttaaaattggttgtcaaaatatcattcct 11778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 9792766 - 9792808
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtga 438  Q
    ||||||||||||| |||||| || |||||||||||||||||||    
T  9792766 gagaaatgatatttgaacaaccacttttaaacaacttttgtga 9792808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 38861095 - 38861140
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  38861095 tgagaaatgatatttgaacaatcattttt-tacaacttttgtgacaa 38861140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 48814880 - 48814834
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||| ||||||||| ||||| |||||||| |||||||||||||||||    
T  48814880 tgagtaatgatatttgaacattcattttttaacaacttttgtgacaa 48814834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 9363387 - 9363432
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | |||||||||||  |||||||||||||||||    
T  9363387 gagaaatgatatttgtacaatcattttataacaacttttgtgacaa 9363432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 12007257 - 12007212
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  12007257 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 12007212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 43159646 - 43159601
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| ||||||| ||||| |||||||||||    
T  43159646 gagaaatgatatttgaacaaccattttttaacaatttttgtgacaa 43159601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 47448826 - 47448871
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  47448826 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 47448871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 574
Target Start/End: Complemental strand, 2069439 - 2069403
Alignment:
Q  538 aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  2069439 aaagttgtttaaaattggttgtcaaaatatcattcct 2069403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 396 - 436
Target Start/End: Original strand, 41750115 - 41750155
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgt 436  Q
    |||||||||||||  ||||| ||||||||||||||||||||    
T  41750115 gagaaatgatatttaaacaaccatttttaaacaacttttgt 41750155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 1169 - 1090
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||| || | | ||||||||||||||  ||||||||||| ||||||||||| |||||||||||||    
T  1169 attgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcattcct 1090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 5466303 - 5466224
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||| || | | ||||||||||||||  ||||||||||| ||||||||||| |||||||||||||    
T  5466303 attgttattgtccaataagaagtgaggaaaaaggttgtcacccaaagttgtttaaaattggttgtcaaaatatcattcct 5466224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 38762280 - 38762205
Alignment:
Q  501 ttattgtccaataaggag-aggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||| ||||||| || | |||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||    
T  38762280 ttattgttcaataagaaggaagaaaaaaggttgtccctaaaagttgtttaaaattggttgtcaaaatatcattcct 38762205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 49931552 - 49931598
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||| | |||||||||||| |||||||||||||||||    
T  49931552 tgagaaatgatatttgtacaatcattttttaacaacttttgtgacaa 49931598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 16583132 - 16583087
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||    
T  16583132 gagaaatgatatttgaacaatcacttttaaataacttttgtgacaa 16583087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 702455 - 702376
Alignment:
Q  497 attgttattgtccaataagga--gaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||| |  |||||||||| ||||||| || ||||||||    |||||||||||||||||| ||||    
T  702455 attgttattgtccaataagaaaggaggaaaaaaagttgtcaatagagttgtttgattttggttgtccaaatatcactcct 702376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 574
Target Start/End: Original strand, 4604718 - 4604793
Alignment:
Q  501 ttattgtccaataagga-gaggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||| | || ||||||| |||||| ||||| |||||||  ||||||||||| |||||||||||||    
T  4604718 ttattgtccaataagaatgaagaaaaaaagttgtccctaaaagttgttttaaattggttgtcaaaatatcattcct 4604793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 19947814 - 19947767
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  19947814 atgagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 19947767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 516 - 579
Target Start/End: Original strand, 40809610 - 40809673
Alignment:
Q  516 gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattccttttat 579  Q
    ||||||||||  ||||||||| | |||||||||  ||||||||| |||||||||||||| ||||    
T  40809610 gagaggaaaagtggttgtcacaatagttgtttaggattggttgtacaaatatcattcctcttat 40809673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 49020477 - 49020430
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| | |||| ||||||| |||||||||||||||||    
T  49020477 atgagaaatgatatttgtacaaccattttttaacaacttttgtgacaa 49020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 438
Target Start/End: Original strand, 5980863 - 5980905
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtga 438  Q
    |||||||||||||  |||||| |||||||||||||||||||||    
T  5980863 gagaaatgatattttaacaataatttttaaacaacttttgtga 5980905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 571
Target Start/End: Original strand, 5980960 - 5981035
Alignment:
Q  501 ttattgtccaataag--gagaggaaaaaaggttgtca---ctaaagttgtttacaattggttgtccaaatatcatt 571  Q
    ||||||| |||||||  ||||||||||||||||||||   |||| |||||||| |||| ||||| |||||||||||    
T  5980960 ttattgtgcaataagaagagaggaaaaaaggttgtcatcactaatgttgtttaaaattagttgttcaaatatcatt 5981035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 649768 - 649813
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  649768 gagaaatgatatttgaacaaccatttttttacaacttttgtgacaa 649813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 9567032 - 9566987
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  9567032 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 9566987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 547
Target Start/End: Complemental strand, 16583027 - 16582979
Alignment:
Q  501 ttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgttt 547  Q
    |||||||||||||||  ||||||||||||| || |||||||||||||||    
T  16583027 ttattgtccaataagaagagaggaaaaaagattatcactaaagttgttt 16582979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 30467597 - 30467552
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||| ||||||||  ||||||||||||||||    
T  30467597 gagaaatgatatttgaacagtcattttttgacaacttttgtgacaa 30467552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 30535991 - 30536036
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | |||||||||||| ||||| |||||||||||    
T  30535991 gagaaatgatatttgtacaatcattttttaacaatttttgtgacaa 30536036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 35369700 - 35369744
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||    
T  35369700 gagaaatgatatttgaacaatcattttt-tacaacttttgtgacaa 35369744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 35414544 - 35414465
Alignment:
Q  497 attgttattgtccaataagga--gaggaaaaaaggttgtca-ctaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||| |  ||||||||||| |||||| | |||||| |||| |||||| |||| |||||||||||||    
T  35414544 attgttattgtccaataagaatagaggaaaaaag-ttgtcatccaaagttatttaaaattggatgtcaaaatatcattcct 35414465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 42824454 - 42824499
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| || ||| ||||||||||| |||||||||||||    
T  42824454 gagaaatgatatttgatcaaccatttttaaactacttttgtgacaa 42824499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 45333570 - 45333614
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||    
T  45333570 gagaaatgatatttgaacaatcattttt-tacaacttttgtgacaa 45333614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 48983739 - 48983694
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  48983739 gagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 48983694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 516 - 573
Target Start/End: Complemental strand, 49804883 - 49804826
Alignment:
Q  516 gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcc 573  Q
    ||||||||||  |||||| || |||||| |||| |||||||||| |||||||||||||    
T  49804883 gagaggaaaagtggttgttacaaaagttatttagaattggttgtacaaatatcattcc 49804826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 6591 - 6546
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||    
T  6591 gagaaatgatatttgaacaatcattttttaacaacttttgtgacaa 6546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 14443194 - 14443243
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  14443194 atatgagaaatgatatttgaacaatcattttttgacaacttttgtgacaa 14443243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 574
Target Start/End: Original strand, 54128176 - 54128228
Alignment:
Q  523 aaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||||||||||||||| |||||||| ||||||||||| |||||||||||||    
T  54128176 aaaaaggttgtcactaaaagttgtttaaaattggttgtcaaaatatcattcct 54128228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 51734601 - 51734549
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgttt 547  Q
    |||||||||||||||||||  ||||| ||||||| ||||||||||||||||||    
T  51734601 attgttattgtccaataagaagagagaaaaaaagattgtcactaaagttgttt 51734549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 51734704 - 51734659
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| || ||||||||||||||||||||||    
T  51734704 gagaaatgatatttgaacaaccacttttaaacaacttttgtgacaa 51734659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 3078982 - 3078934
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| | |||||||||||  |||||||||||||||||    
T  3078982 tatgagaaatgatatttgtacaatcattttgtaacaacttttgtgacaa 3078934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 572
Target Start/End: Original strand, 12706288 - 12706344
Alignment:
Q  516 gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattc 572  Q
    ||||||||||||||||||||  |||  |||||| |||||||||| ||||||||||||    
T  12706288 gagaggaaaaaaggttgtcataaaaaatgtttaaaattggttgtacaaatatcattc 12706344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 21014055 - 21014099
Alignment:
Q  397 agaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||    
T  21014055 agaaatgatatttgaacaatcattttttgacaacttttgtgacaa 21014099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 530 - 574
Target Start/End: Complemental strand, 42135312 - 42135268
Alignment:
Q  530 ttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||| |||||| |||||| |||||||||||||||||||    
T  42135312 ttgtcactaaaattgtttgcaattgattgtccaaatatcattcct 42135268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 569
Target Start/End: Original strand, 54909426 - 54909500
Alignment:
Q  497 attgttattgtccaat--aaggagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatca 569  Q
    ||||||||||||||||  || |||||||| |||||||||| |||||||| |||    ||||||||||||||||||    
T  54909426 attgttattgtccaatgaaaagagaggaataaaggttgtccctaaagttattttattttggttgtccaaatatca 54909500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 7146191 - 7146153
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaactttt 434  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  7146191 gagaaatgatatttgaacaaccatttttaaacaactttt 7146153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 441
Target Start/End: Original strand, 46634099 - 46634144
Alignment:
Q  395 tgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||    
T  46634099 tgagaaatgatatttgaacaatcattttt-tacaacttttgtgacaa 46634144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 51255737 - 51255791
Alignment:
Q  387 ttatgatatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||| ||| ||||||||||||| |||||| |||||||  ||||||||||||||||    
T  51255737 ttattataagagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 51255791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 54128052 - 54128098
Alignment:
Q  396 gagaaatgatattcgaa-caatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  54128052 gagaaatgatatttgaaacaaccatttttaaacaacttttgtgacaa 54128098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 20760255 - 20760300
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||    
T  20760255 gagaaatgatatttgtacaattattttttaacaacttttgtgacaa 20760300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 20766646 - 20766691
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | ||||| |||||| |||||||||||||||||    
T  20766646 gagaaatgatatttgtacaattattttttaacaacttttgtgacaa 20766691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 32012892 - 32012941
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||| |||||| || ||||  ||||||||||||||||    
T  32012892 atatgagaaatgatatttgaacaaccaatttttgacaacttttgtgacaa 32012941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 54342885 - 54342964
Alignment:
Q  497 attgttattgtccaataaggagagga--aaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||||||||| | ||||  || |||||||||||  ||||||||||| ||||||||||| | |||||||||||    
T  54342885 attgttattgtccaataagaa-aggaggaacaaggttgtcacccaaagttgtttaaaattggttgtcaagatatcattcct 54342964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 54909323 - 54909368
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| |||| |||||||| |||||||||||    
T  54909323 gagaaatgatatttgaacaaccattattaaacaatttttgtgacaa 54909368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 56474835 - 56474790
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||||||||  |||| |||||||||||    
T  56474835 gagaaatgatatttgaacaatcatttttttacaatttttgtgacaa 56474790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 5622455 - 5622502
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  5622455 tatgagaaatgatatttgaacaaccattttt-tacaacttttgtgacaa 5622502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 523 - 574
Target Start/End: Complemental strand, 23719462 - 23719410
Alignment:
Q  523 aaaaaggttgtcact-aaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||||| | ||||||||||  ||||||||||| |||||||||||||    
T  23719462 aaaaaggttgtcattcaaagttgtttcaaattggttgtcaaaatatcattcct 23719410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 31178705 - 31178757
Alignment:
Q  522 aaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||| |||||||| ||||||||||| ||| |||||  ||||||||||||||    
T  31178705 aaaaaatgttgtcacaaaagttgtttaaaatcggttggacaaatatcattcct 31178757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 42733638 - 42733591
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  42733638 atgagaaatgatatttgaacaaccatttttaaacaatttttgtgacaa 42733591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 516 - 574
Target Start/End: Original strand, 14127369 - 14127427
Alignment:
Q  516 gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||  ||||||||| |||||||||||  ||||||||| ||||||||||||||    
T  14127369 gagaggaaaagtggttgtcacaaaagttgtttaggattggttgtacaaatatcattcct 14127427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Original strand, 16700863 - 16700915
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgttt 547  Q
    ||||||||| |||||||||  |||||||||||| |||||||||||||||||||    
T  16700863 attgttattctccaataagaagagaggaaaaaatgttgtcactaaagttgttt 16700915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 42733535 - 42733483
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgttt 547  Q
    |||||||||||||||||||  ||||||||||||| || |||||||||||||||    
T  42733535 attgttattgtccaataagaagagaggaaaaaagattatcactaaagttgttt 42733483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 7271849 - 7271896
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  7271849 tatgagaaatgatatttgaacaataattttt-aacaacttttgtgacaa 7271896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 579
Target Start/End: Complemental strand, 7612173 - 7612093
Alignment:
Q  501 ttattgtccaataaggag-aggaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcattccttttat 579  Q
    |||||||| |||||| || | |||||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||| ||||    
T  7612173 ttattgtctaataagaaggaagaaaaaagattgtccctaaaagttgtttaaaattggttgtcaaaatatcattcctcttat 7612093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 26026893 - 26026941
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  26026893 tatgagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 26026941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 5601060 - 5601013
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  5601060 atgagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 5601013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Original strand, 5639560 - 5639607
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  5639560 atgagaaatgatatttgaacaaccattttttgacaacttttgtgacaa 5639607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 23754780 - 23754733
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| |||||| ||||||| || ||||||||||||||    
T  23754780 atgagaaatgatatttgaacaaccattttttaataacttttgtgacaa 23754733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 25987860 - 25987813
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||||||    
T  25987860 atgagaaatgatatttgaacaaccatttttttacaacttttgtgacaa 25987813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 12172031 - 12171981
Alignment:
Q  523 aaaaaggttgtcactaaagtt-gtttacaattggttgtccaaatatcattc 572  Q
    |||||||||||||||||| || ||||| ||||||||||| |||||||||||    
T  12172031 aaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatcattc 12171981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 12172185 - 12172143
Alignment:
Q  399 aaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  12172185 aaatgatatttgaacaaccatttttaaacaaattttgtgacaa 12172143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 523 - 572
Target Start/End: Complemental strand, 12416459 - 12416409
Alignment:
Q  523 aaaaaggttgtcactaaagtt-gtttacaattggttgtccaaatatcattc 572  Q
    |||||||||||||||||| || ||||| ||||||||||| |||||||||||    
T  12416459 aaaaaggttgtcactaaaatttgtttaaaattggttgtcaaaatatcattc 12416409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 441
Target Start/End: Complemental strand, 12416613 - 12416571
Alignment:
Q  399 aaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  12416613 aaatgatatttgaacaaccatttttaaacaaattttgtgacaa 12416571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 13106473 - 13106522
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||| |||||| |||||||  ||||||||| ||||||    
T  13106473 atatgagaaatgatatttgaacaaccatttttggacaacttttttgacaa 13106522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 33100540 - 33100495
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| |||||| ||||||  |||||||||||||||||    
T  33100540 gagaaatgatatttgaacaaccattttataacaacttttgtgacaa 33100495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 35792069 - 35792114
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| | |||||||||||| || ||||||||||||||    
T  35792069 gagaaatgatatttgtacaatcattttttaaaaacttttgtgacaa 35792114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Original strand, 40649450 - 40649495
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  40649450 gagaaatgatatttgaacattcattttttaacaatttttgtgacaa 40649495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 522 - 574
Target Start/End: Original strand, 1775437 - 1775489
Alignment:
Q  522 aaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||| ||||||||| |||||||||||  |||||| || ||||||||||||||    
T  1775437 aaaaatggttgtcacaaaagttgtttaagattggtggtacaaatatcattcct 1775489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 9630136 - 9630172
Alignment:
Q  397 agaaatgatattcgaacaatcatttttaaacaacttt 433  Q
    |||||||||||| |||||||||||||| |||||||||    
T  9630136 agaaatgatatttgaacaatcattttttaacaacttt 9630172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 577
Target Start/End: Original strand, 10839507 - 10839555
Alignment:
Q  529 gttgtcactaaagttgtttacaattggttgtccaaatatcattcctttt 577  Q
    |||||||| ||||||||| | |||||||||| ||||||||||| |||||    
T  10839507 gttgtcacaaaagttgttaaaaattggttgttcaaatatcatttctttt 10839555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 10839552 - 10839508
Alignment:
Q  397 agaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||| |||||| || |||| |||||||||||||||||    
T  10839552 agaaatgatatttgaacaaccaatttttaacaacttttgtgacaa 10839508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 528 - 572
Target Start/End: Complemental strand, 39199931 - 39199887
Alignment:
Q  528 ggttgtcactaaagttgtttacaattggttgtccaaatatcattc 572  Q
    ||||||||| |||||||||||  ||||||||| ||||||||||||    
T  39199931 ggttgtcacaaaagttgtttaagattggttgtacaaatatcattc 39199887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 441
Target Start/End: Complemental strand, 11635608 - 11635561
Alignment:
Q  394 atgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  11635608 atgagaaatgatatttgaacaatcattttttgacaacttttgtgacaa 11635561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 8505845 - 8505800
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||||||||  ||||||||||||||||    
T  8505845 gagaaatgatatttgaacaatcattttttgacaacttttgtgacaa 8505800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 23632605 - 23632553
Alignment:
Q  497 attgttattgtccaataaggagaggaaaa--aaggttgtcactaaagttgttt 547  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||||||||||||    
T  23632605 attgttattgtccaataagaagagaaaaacaaaggttgtcactaaagttgttt 23632553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 18065164 - 18065116
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||||||||    
T  18065164 tatgagaaatgatatttgaacaatcactttttgacaacttttgtgacaa 18065116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 440
Target Start/End: Complemental strand, 23632708 - 23632664
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgaca 440  Q
    ||||||||||||| |||||| || |||||||||||||||||||||    
T  23632708 gagaaatgatatttgaacaaccacttttaaacaacttttgtgaca 23632664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 501 - 571
Target Start/End: Complemental strand, 28982605 - 28982533
Alignment:
Q  501 ttattgtccaataaggagag-gaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcatt 571  Q
    ||||||||||||||  |||| | |||||||||||||||||| |||||| | ||||||||||| ||||||||||    
T  28982605 ttattgtccaataaaaagagaggaaaaaggttgtcactaaaagttgttgaaaattggttgtcaaaatatcatt 28982533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 441
Target Start/End: Complemental strand, 34383932 - 34383884
Alignment:
Q  393 tatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||||||| ||||| |||||||| ||||| |||||||||||    
T  34383932 tatgagaaatgatatttgaacattcattttttaacaatttttgtgacaa 34383884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 574
Target Start/End: Complemental strand, 11113962 - 11113904
Alignment:
Q  516 gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    ||||||||||  |||| |||| |||||||||||  ||||||||| ||||||||||||||    
T  11113962 gagaggaaaagtggttatcacaaaagttgtttaggattggttgtacaaatatcattcct 11113904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 2242093 - 2242048
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||| ||||||||||||||  |||| |||||||||||    
T  2242093 gagaaatgatatttgaacaatcattttttgacaatttttgtgacaa 2242048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 5456917 - 5456876
Alignment:
Q  400 aatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||| ||||| |||||||| |||||||||||||||||    
T  5456917 aatgatatttgaacattcattttttaacaacttttgtgacaa 5456876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 25562000 - 25561963
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttt 433  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  25562000 gagaaatgatattcgtacaatcatttttatacaacttt 25561963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 26101514 - 26101477
Alignment:
Q  396 gagaaatgatattcgaacaatcatttttaaacaacttt 433  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  26101514 gagaaatgatattcgtacaatcatttttatacaacttt 26101477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 33712316 - 33712365
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||| |||||| || ||||  ||||||||||||||||    
T  33712316 atatgagaaatgatatttgaacaaccactttttgacaacttttgtgacaa 33712365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 497 - 571
Target Start/End: Complemental strand, 5456818 - 5456742
Alignment:
Q  497 attgttattgtccaataaggagag-gaaaaaaggttgtcactaaa-gttgtttacaattggttgtccaaatatcatt 571  Q
    ||||||||||||||||||  |||| ||||||| ||| |||||||| ||||||   ||||||||||| ||||||||||    
T  5456818 attgttattgtccaataaaaagagcgaaaaaatgttatcactaaaagttgttggaaattggttgtcaaaatatcatt 5456742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 441
Target Start/End: Original strand, 24900776 - 24900820
Alignment:
Q  397 agaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    |||||||||||| |||||| |||||||  ||||||||||||||||    
T  24900776 agaaatgatatttgaacaaccattttttgacaacttttgtgacaa 24900820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 8468 - 8517
Alignment:
Q  392 atatgagaaatgatattcgaacaatcatttttaaacaacttttgtgacaa 441  Q
    ||||||||||||||||| |||||||||||||| ||||| |||| ||||||    
T  8468 atatgagaaatgatatttgaacaatcattttttaacaatttttatgacaa 8517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Complemental strand, 6112 - 6033
Alignment:
Q  497 attgttattgtccaataag--gagaggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||| || |||||||||  ||||||||||| ||||||||| || |||||||| |||||| ||| ||||||||| ||||    
T  6112 attgtttttatccaataagaagagaggaaaaatggttgtcacaaatgttgtttaaaattggatgtacaaatatcactcct 6033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 519 - 574
Target Start/End: Complemental strand, 726 - 671
Alignment:
Q  519 aggaaaaaaggttgtcactaaagttgtttacaattggttgtccaaatatcattcct 574  Q
    |||||||  ||||||||| ||||||||||| ||||| |||| ||||||||||||||    
T  726 aggaaaagtggttgtcacaaaagttgtttagaattgcttgtacaaatatcattcct 671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University