View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_60 (Length: 228)
Name: NF2717_low_60
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 23989214 - 23989017
Alignment:
| Q |
12 |
taataagttaatgagaccacatcatcattaattatcataaccataataagcaacgaagaacaattttaaacaaagaataatcttggacagaacaacggca |
111 |
Q |
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| T |
23989214 |
taataagttaatgagaccacatcatcattaattatcataaccataataagcaacgaagaacaattttaaacaaagaataatcttgaacagaacaacggca |
23989115 |
T |
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| Q |
112 |
tagcaatttaacaagcgggagttatcaatattaagtttnnnnnnntaatataatcaacataccatatttagcaatcccttgaaagtagatgaaagccg |
209 |
Q |
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| T |
23989114 |
tagcaatttaacaagcgggagttatcaatattaagtttaaaaaaataatataatcaacataccatatttagcaatcccttgaaactagatgaaagccg |
23989017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 23982379 - 23982331
Alignment:
| Q |
80 |
aacaaagaataatcttggacagaacaacggcatagcaatttaacaagcg |
128 |
Q |
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| T |
23982379 |
aacaaagaacaatcttggacagaacaacggcaaagcaagttaacaagcg |
23982331 |
T |
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