View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2717_low_65 (Length: 206)
Name: NF2717_low_65
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_65 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 28328681 - 28328509
Alignment:
| Q |
16 |
atatgggaaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28328681 |
atatgggaaaattcaaatatgttcaagcctgaaagatttttggaatgtgacattaattataagggtaataattttgagctcataccttttggggcaggta |
28328582 |
T |
|
| Q |
116 |
aaagaatttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaactt |
188 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328581 |
aaagaatttgtccgggattgccattagctcataggaatgtgcacttaattgtggcatcccttctatgcaactt |
28328509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 28306997 - 28306831
Alignment:
| Q |
19 |
tgggaaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaa |
118 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| ||||| || || |||| |
|
|
| T |
28306997 |
tgggaaaatccaaataagtttgagcctgaaagatttttggagcgtgacattaattataagggtaacaattttgagcttataccatttggggctggcaaaa |
28306898 |
T |
|
| Q |
119 |
gaatttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
28306897 |
gaatttgcccaggattgccattagctcataggagtgtgcatttaattgtggcatcccttctacgcaa |
28306831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 28290971 - 28291128
Alignment:
| Q |
23 |
aaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
122 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |||||||| || |||||||| |
|
|
| T |
28290971 |
aaaatccaaatatgttcatgcccgaaagatttttggagtgtgacattaattataagggcaaccattttgagcttataccctttggagctggcaaaagaat |
28291070 |
T |
|
| Q |
123 |
ttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttcta |
180 |
Q |
| |
|
||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28291071 |
ttgtccaggattgtcattagctcataggaatgtgcacttaattgtggcatcccttcta |
28291128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 28319808 - 28319671
Alignment:
| Q |
43 |
cctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaatttgcccaggattgccattag |
142 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
28319808 |
cctgaaagatttttggagtgtgacattaactataaaggtaataattttgagcttataccctttggagctggcaaaagaatttgtccaggattgccattag |
28319709 |
T |
|
| Q |
143 |
ctcataggagtgtgcacttaattgtggcatcccttcta |
180 |
Q |
| |
|
||||||| | | |||| ||||| ||||||||||||||| |
|
|
| T |
28319708 |
ctcatagaactatgcatttaatggtggcatcccttcta |
28319671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 28295995 - 28295833
Alignment:
| Q |
23 |
aaaattcaaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
122 |
Q |
| |
|
||||| || ||||||| | |||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
28295995 |
aaaatccagatatgtttatgcctgaaagatttttggagtgtgacattaagtatatgggtagcaattttgagcttataccgtttggagcaggcaaaagaat |
28295896 |
T |
|
| Q |
123 |
ttgcccaggattgccattagctcataggagtgtgcacttaattgtggcatcccttctatgcaa |
185 |
Q |
| |
|
||| ||||| ||||||||||||||||| | | |||| || ||||| ||||| |||||| |||| |
|
|
| T |
28295895 |
ttgtccagggttgccattagctcatagaactatgcatttgattgtagcatctcttctacgcaa |
28295833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 28302841 - 28302703
Alignment:
| Q |
47 |
aaagatttttggagtgtgacattaattataagggtaataattttgagctcataccttttggagcaggtaaaagaatttgcccaggattgccattagctca |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |||||||||| ||| |||||||||| ||||| |
|
|
| T |
28302841 |
aaagatttttggagtgtgacattaattataagggtaataattttgaacttataccctttggggcaggcaaaagaatttttccatgattgccattggctca |
28302742 |
T |
|
| Q |
147 |
taggagtgtgcacttaattgtggcatcccttctatgcaa |
185 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||||| |||| |
|
|
| T |
28302741 |
tagggtagtgcatttaattgtgacatcccttctacgcaa |
28302703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 28317245 - 28317297
Alignment:
| Q |
30 |
aaatatgttcaagcctgaaagatttttggagtgtgacattaattataagggta |
82 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
28317245 |
aaatatattcacgcctgaaagatttttggaggatgacattaattattagggta |
28317297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 5594187 - 5594236
Alignment:
| Q |
73 |
tataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
122 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| || |||| |||||| |
|
|
| T |
5594187 |
tataagggtaataattttgagttcattccttttggtgctggtagaagaat |
5594236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 22831878 - 22831829
Alignment:
| Q |
73 |
tataagggtaataattttgagctcataccttttggagcaggtaaaagaat |
122 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| || |||| |||||| |
|
|
| T |
22831878 |
tataagggtaataattttgagttcattccttttggtgctggtagaagaat |
22831829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University