View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2717_low_7 (Length: 631)

Name: NF2717_low_7
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2717_low_7
NF2717_low_7
[»] chr4 (6 HSPs)
chr4 (73-219)||(24414295-24414441)
chr4 (101-183)||(28287353-28287435)
chr4 (517-580)||(49888398-49888461)
chr4 (524-581)||(6216445-6216501)
chr4 (102-183)||(15634323-15634403)
chr4 (102-157)||(54239216-54239271)
[»] chr3 (2 HSPs)
chr3 (77-183)||(27484708-27484814)
chr3 (179-215)||(33528464-33528500)
[»] chr1 (2 HSPs)
chr1 (77-183)||(50005481-50005587)
chr1 (509-581)||(26767621-26767693)
[»] chr6 (2 HSPs)
chr6 (107-155)||(2339480-2339528)
chr6 (100-168)||(10779517-10779585)
[»] chr8 (1 HSPs)
chr8 (101-171)||(9295026-9295096)
[»] chr5 (2 HSPs)
chr5 (107-183)||(14503752-14503828)
chr5 (101-157)||(35161152-35161208)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 24414441 - 24414295
Alignment:
Q  73 agaaagtgatgtaggtaaattggtggtgcgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggac 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||     
T  24414441 agaaagtgatgtaggtaaattggtggtgcgtatagaagatgaagtggcgcgcaagaaatgctcacttggaatagtgtagatttgatatctgatgtcggat 24414342  T
Q  173 tgactcgaatttagccgttcgaagtcatttgaaggtccaaaactaca 219  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  24414341 tgactcgaatttagccgttcgaagtcatctgaagttccaaaactaca 24414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 28287353 - 28287435
Alignment:
Q  101 cgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 183  Q
    ||||| ||||||||||| |||||||||||||| ||| |  |||| ||| ||||||||||||||||||| || ||| |||||||    
T  28287353 cgtattgaagatgaagttgcgcgcaagaaatgttcaatgaaaatggtgcagatttgatatctggtgtctgattgattcgaatt 28287435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 580
Target Start/End: Complemental strand, 49888461 - 49888398
Alignment:
Q  517 ttttgatctcctatttttatcattttgtaaaatctcttcccctgttttaaaatttgacaatttt 580  Q
    |||||| |||||||||||||||||||| |||||   ||||||| ||||||||||||| ||||||    
T  49888461 ttttgacctcctatttttatcattttgcaaaattggttcccctattttaaaatttgataatttt 49888398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 524 - 581
Target Start/End: Complemental strand, 6216501 - 6216445
Alignment:
Q  524 ctcctatttttatcattttgtaaaatctcttcccctgttttaaaatttgacaattttg 581  Q
    |||||||||||||||||||| ||||| | ||||||| |||||||||||||||| ||||    
T  6216501 ctcctatttttatcattttgcaaaat-tgttcccctattttaaaatttgacaactttg 6216445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 15634323 - 15634403
Alignment:
Q  102 gtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 183  Q
    |||| |||| ||||||||||| ||||||| | ||  |||||||| ||||||||||| ||||||||||||| |||||| ||||    
T  15634323 gtatcgaagttgaagtggcgcacaagaaa-gctcgtttgaaatattgtagatttgacatctggtgtcggattgactcaaatt 15634403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 54239216 - 54239271
Alignment:
Q  102 gtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttga 157  Q
    |||| |||||||||||| ||||||||||||| ||| |  |||||||||||||||||    
T  54239216 gtatcgaagatgaagtgacgcgcaagaaatgctcaatgaaaatagtgtagatttga 54239271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 27484814 - 27484708
Alignment:
Q  77 agtgatgtaggtaaattggtggtgcgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgac 176  Q
    |||||| |||| ||| ||||||  | ||| |||||| ||||||||| ||||||| | | |||||||||||||||||||||| |||||||||| ||  |||    
T  27484814 agtgatttaggcaaactggtggcacatatcgaagataaagtggcgcacaagaaaggttaacttgaaatagtgtagatttgacatctggtgtcagatcgac 27484715  T
Q  177 tcgaatt 183  Q
    |||||||    
T  27484714 tcgaatt 27484708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 33528500 - 33528464
Alignment:
Q  179 gaatttagccgttcgaagtcatttgaaggtccaaaac 215  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  33528500 gaatttagccattcgaagtcatctgaaggtccaaaac 33528464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 50005587 - 50005481
Alignment:
Q  77 agtgatgtaggtaaattggtggtgcgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgac 176  Q
    |||||| |||||||| ||| || | |||| |||||||| ||||||||||||||    ||||||||||||||| |||||||||||| | |||| || ||||    
T  50005587 agtgatctaggtaaactggcggcgtgtatcgaagatgacgtggcgcgcaagaatgaatcacttgaaatagtgcagatttgatatccgatgtcagattgac 50005488  T
Q  177 tcgaatt 183  Q
    |||||||    
T  50005487 tcgaatt 50005481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 581
Target Start/End: Original strand, 26767621 - 26767693
Alignment:
Q  509 aattgtagttttgatctcc-tatttttatcattttgtaaaatctcttcccctgttttaaaatttgacaattttg 581  Q
    ||||| ||||||| ||||| |||||| | ||||||||||||| | ||||||| ||||||||||||||| |||||    
T  26767621 aattgcagttttggtctccctattttcaccattttgtaaaat-tgttcccctattttaaaatttgacagttttg 26767693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 2339528 - 2339480
Alignment:
Q  107 gaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagattt 155  Q
    |||||||||||||| | ||||||||| ||||||||||| ||||||||||    
T  2339528 gaagatgaagtggctcacaagaaatgctcacttgaaatggtgtagattt 2339480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 168
Target Start/End: Original strand, 10779517 - 10779585
Alignment:
Q  100 gcgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtc 168  Q
    |||||| |||||||||||||||||||||||| | |||||| |||| ||| ||||||   ||||||||||    
T  10779517 gcgtattgaagatgaagtggcgcgcaagaaaggttcacttaaaatggtgcagattttgcatctggtgtc 10779585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 171
Target Start/End: Original strand, 9295026 - 9295096
Alignment:
Q  101 cgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcgga 171  Q
    ||||| ||||||||||||| ||| |||||||| ||| |  ||||||||||||||||  ||| |||||||||    
T  9295026 cgtatcgaagatgaagtggtgcgtaagaaatgctcaatgaaaatagtgtagatttggcatccggtgtcgga 9295096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 14503752 - 14503828
Alignment:
Q  107 gaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttgatatctggtgtcggactgactcgaatt 183  Q
    |||||| ||||||||||||||||| | ||| |  |||||||| |||||| | |||||||||| || |||||| ||||    
T  14503752 gaagataaagtggcgcgcaagaaaggttcaataaaaatagtgcagatttaacatctggtgtcagattgactcaaatt 14503828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 35161208 - 35161152
Alignment:
Q  101 cgtatagaagatgaagtggcgcgcaagaaatggtcacttgaaatagtgtagatttga 157  Q
    ||||| |||||||||||| ||  ||||||||| ||| ||| ||||||||||||||||    
T  35161208 cgtatcgaagatgaagtgacgtacaagaaatgttcatttggaatagtgtagatttga 35161152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University