View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2717_low_9 (Length: 623)
Name: NF2717_low_9
Description: NF2717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2717_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 31 - 607
Target Start/End: Complemental strand, 41338658 - 41338084
Alignment:
| Q |
31 |
tagaagatgcaaataagggcaaagaaagcaaatctaacggttcatatcacgcttatccaaataatcaacggtcagcagcagttatacataaagcaaatcc |
130 |
Q |
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| T |
41338658 |
tagaagatgcaaataagggcaaagaaagcaaatctaacggttcatatcacgcttatccaaataatcaacggtcagcagcagttatacataaagcaaatcc |
41338559 |
T |
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| Q |
131 |
aatgccatttcatttcacgaagcattattattttgcatgaatttttgagccctagtagattcataattcgtaccataacatcttcaaatttaacccacac |
230 |
Q |
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| T |
41338558 |
aatgccatttcatttcacgaagcattattattttgcatgaatttttgagccctagtagattcataattcgtaccataacatcttcaaatttaacccacac |
41338459 |
T |
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| Q |
231 |
atttctctttacttctttagttattttccttcataaccctcaaaacgnnnnnnngcaatcacaaaccgacatttttggaatgaaagggcaacccatgtta |
330 |
Q |
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| T |
41338458 |
atttctctttacttctttagttattttccttcataaccctcaaaacgtttttttgcaatcacaaaccgacatttttggaatgaaagggcaacccatgtta |
41338359 |
T |
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| Q |
331 |
caacctacgtgatgacgacacaaagacatgaagatagcttttgtctgaaatatatcggtctctgctgctcatgttgttacttgctttattcgttctttaa |
430 |
Q |
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| T |
41338358 |
caacctacgtgatgacgacac--agacatgaagatagcttttgtctgaaatatatcggtctctgctgctcatgttgttacttgctttattcgttctttaa |
41338261 |
T |
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| Q |
431 |
agccaacattggttcttacaaaagttatatatatcttccatattgcttttccnnnnnnncattagctaatagttttgtttattgattaaattaatactat |
530 |
Q |
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| T |
41338260 |
agccaacattggttcttacaaaagttatatatatcttccatattgcttttcctttttttcattagctaatagttttgtttattgattaaattaatactat |
41338161 |
T |
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| Q |
531 |
agtttgtaataattattgagttgtatatgatctgttgcttgattaactttgaaacacaaaagctactcggaataaga |
607 |
Q |
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| T |
41338160 |
agtttgtaataattattgagttgtatatgatctgttgcttgattaactttgaaacacaaaagctactcggaataaga |
41338084 |
T |
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