View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2718_low_1 (Length: 421)
Name: NF2718_low_1
Description: NF2718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2718_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 24991305 - 24990922
Alignment:
| Q |
1 |
cccggcaatcaaaagatcgaaggcttggtttatctcgtcaaagggaagctcgtgagtgatgaaattatccagctttatcacctaaaaataatagaagaat |
100 |
Q |
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| T |
24991305 |
cccggcaatcaaaagattgaaggcttggtttatctcatcaaagggaagctcgtgagtgatgaaattatccaactttatcgcctaaaaataatagaagaat |
24991206 |
T |
|
| Q |
101 |
ataattatttgcacattaaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaat |
200 |
Q |
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| T |
24991205 |
ataattatttgcacattaaaatgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaat |
24991106 |
T |
|
| Q |
201 |
tgacttttgcctttgaaacctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatgggaagcaactttggtgatccatgaa |
300 |
Q |
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| T |
24991105 |
tgacttttgcctttgaaacctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatgggaagcaactttggtgatccatgaa |
24991006 |
T |
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| Q |
301 |
ttcccaatagtacagtcaatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttttaactagtaa |
384 |
Q |
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| T |
24991005 |
ttcccaatagtacagtcaatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttttaactagtaa |
24990922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 24994974 - 24994607
Alignment:
| Q |
1 |
cccggcaatcaaaagatcgaaggcttggtttatctcgtcaaagggaagctcgtgagtgatgaaattatccagctttatcacctaaaaataatagaagaat |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||||||||||| |
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| T |
24994974 |
cccggcaatcaaaagatcgaaggctttgtttatctcgtcaaagggaagttcgtgagtgatgaaatcatccaactttatcgcctaaaaataatagaagaat |
24994875 |
T |
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| Q |
101 |
ataattatttgcacattaaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaat |
200 |
Q |
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||||||| ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24994874 |
ataattacttggacactaaaacgcatcgcataatttgagtttttgc---tagtgatgatcatt-acccctttcatgcattctgtggcaagattaggcaat |
24994779 |
T |
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| Q |
201 |
tgacttttgcctttgaaacctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatgggaagcaactttggtgatccatgaa |
300 |
Q |
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||||||||||||||||||||||| || || || ||||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
24994778 |
tgacttttgcctttgaaacctccaaagaccgatccttcgattttgcggccatcaaagagctccattgggtggagaggaagtaactttggtgatgcatgaa |
24994679 |
T |
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| Q |
301 |
ttcccaatagtacagtcaatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttt |
374 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||| |||| ||||||||||||||||| |||| |
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| T |
24994678 |
ttcccaatagtatagtcaatccccaaccctacattatac--aattagacataaaatttgatagtgcacagtttt |
24994607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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