View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2719_high_13 (Length: 230)
Name: NF2719_high_13
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 28105968 - 28106185
Alignment:
| Q |
1 |
tttgcaaaccccccataatattctctcacatgcatacacacttacgcatttccgaacactaattaattatcaatatgatcaaacttgaacattctatatt |
100 |
Q |
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| T |
28105968 |
tttgaaaaccccccataatattctctcacatgcatacacacttacgcatttccgaacactaattaattatcaatatgatcaaacttgaacattctatatt |
28106067 |
T |
|
| Q |
101 |
gaatgcaagctcgattggatttagattttaaaagactatttgataacattgattttggcttgaataatgcatacaagccagctcgtaatattgtgtttta |
200 |
Q |
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| T |
28106068 |
gaatgcaagct-tattggatttagattttaaaagactatttgataacattgattttggcttgaataatgcatacaagccagctcgtaatattgtgtttta |
28106166 |
T |
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| Q |
201 |
ttagttctttatttttcat |
219 |
Q |
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||||||||||||||||||| |
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| T |
28106167 |
ttagttctttatttttcat |
28106185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 27966702 - 27966491
Alignment:
| Q |
5 |
caaaccccccataatattctctcacatgcatacacacttacgcatttccgaacactaattaattatcaatatgatcaaacttgaacattctatattgaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| || |||| |||||||||||||| ||| |
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| T |
27966702 |
caaaccccccataatattctctcacatgcatacacacttaggcatttccggacactaattgattatcaatataattaaac--gaacattctatattcaat |
27966605 |
T |
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| Q |
105 |
gcaagctcgattggatttagattttaaaagactatttgataacattgattttggcttgaataatgcatacaagccagctcgtaatattgtgttttattag |
204 |
Q |
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| T |
27966604 |
gcattctc-attggatttagattttataagactatttgataaaattgattttgacttgaataatgcatacaagccagcttgtactataatgttttatcag |
27966506 |
T |
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| Q |
205 |
ttctttatttttcat |
219 |
Q |
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| T |
27966505 |
ttctttatttttcat |
27966491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 10847676 - 10847606
Alignment:
| Q |
136 |
ctatttgataacattgattttggcttgaataatgcat-----acaagccagctcgtaatattgtgttttat |
201 |
Q |
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| T |
10847676 |
ctatttgataacattgattttggcttgaataatgcatacaatacaagccagctcttaatattgtgttttat |
10847606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 10859227 - 10859157
Alignment:
| Q |
136 |
ctatttgataacattgattttggcttgaataatgcatacaa-----gccagctcgtaatattgtgttttat |
201 |
Q |
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| T |
10859227 |
ctatttgataacattgattttggcttgaataatgcatacaatacaagctagctcttaatattgtgttttat |
10859157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 10491544 - 10491479
Alignment:
| Q |
135 |
actatttgataacattgattttggcttgaataatgcatacaagccagctcgtaatattgtgtttta |
200 |
Q |
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| T |
10491544 |
actatttgataacattgattttggcttgaataatatatacaagccaactcttaattttgtatttta |
10491479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 10543914 - 10543844
Alignment:
| Q |
135 |
actatttgataacattgattttggcttgaataatgcatacaagccagctcgtaatattgtgttttattagt |
205 |
Q |
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||||||||||||| |||||||||||||||||||| || |||||||| ||| ||| ||||| ||||| |||| |
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| T |
10543914 |
actatttgataacgttgattttggcttgaataatacacacaagccaactcttaacattgtattttactagt |
10543844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 10505659 - 10505622
Alignment:
| Q |
139 |
tttgataacattgattttggcttgaataatgcatacaa |
176 |
Q |
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| T |
10505659 |
tttgataacattgattttggcttgaataatacatacaa |
10505622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 10462387 - 10462344
Alignment:
| Q |
135 |
actatttgataacattgattttggcttgaataatgcatacaagc |
178 |
Q |
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||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
10462387 |
actatttgacaacattgattttgtcttgaataatacatacaagc |
10462344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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