View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2719_high_4 (Length: 414)
Name: NF2719_high_4
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 8262392 - 8262786
Alignment:
| Q |
1 |
tgttttttgctagagtaactatgatgtcctgtgagattcttaaaatttaatgtatgagagaagggagggaccaataaagagacagagaagcagagtctta |
100 |
Q |
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| T |
8262392 |
tgttttttgctagagtaactatgatgtcctgtgagattcttaaaatttaatgtatgagagaagggagggaccaataaagagacagagaagcagagtctta |
8262491 |
T |
|
| Q |
101 |
aatatagtgacatttaattttttcaacaacccaacaacaaataggaaatgggcacattaaattttgaagatttgaaacaataagagnnnnnnngcataat |
200 |
Q |
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| T |
8262492 |
aatatagtgacatttaattttttcaacaacccaacaacaaataggaaatgggcacattaaatttttaagatttgaaacaataagagaaaaaaagcataat |
8262591 |
T |
|
| Q |
201 |
ttttgaattgtattatcatagaaacagagatggtcagtgagacaagatgttgagtttagctttgaacatgttcctatatttatgagttcacaggataagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8262592 |
ttttgaattgtattatcatagaaacagagatggtcagtgagacaagatgttgagtttagctttgaacatgttcctatatttatgagttcacaggataagt |
8262691 |
T |
|
| Q |
301 |
ggttttgtttgttaccaaccacatttgaaattcaaaatagtatagcttttggaaagttaagtttgtggttggtgtgatgtgaatatagtgctttc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8262692 |
ggttttgtttgttaccaaccacatttgaaattcaaaatagtatagcttttggaaagttaagtttgtggttggtgtgatgtgaatatagtgctttc |
8262786 |
T |
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