View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2719_high_6 (Length: 368)
Name: NF2719_high_6
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 27693067 - 27693419
Alignment:
| Q |
1 |
ataatccaaacatcaagcacacgtaacacattaaacaacatctgactgacataagaaccataatttggggttcagtgttaaattttaaggcggctttttc |
100 |
Q |
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| T |
27693067 |
ataatccaaacatcaagcacacgtaacatattaaacaacatctgactgacataagaaccataatttggggttcggtgttaaattttaaggcggctttttc |
27693166 |
T |
|
| Q |
101 |
acaggtttaacaatgttgttgttcataattatgaatttattgtttaaactcaagagtagcaacgagaatatactaatttatggaagactagtttagcttt |
200 |
Q |
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| T |
27693167 |
acaggtttaacaatgttgttgttcataattatgaatttattgtttaaactcaagagtagcaacgagaatatactaatttatggaagactagtttagcttt |
27693266 |
T |
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| Q |
201 |
aaatatgtggaaaaattctattttgttagtcattcatagagccatttcaaatcttataaatccatatagtacattgaaatcttaaaagtcttcgaattga |
300 |
Q |
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| T |
27693267 |
aaatatgtggaaaaattctattttgttagtcattcatagagccatttcaaatcttataaatccatatagtacattgaaatcttaaaagtcttcaaattga |
27693366 |
T |
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| Q |
301 |
aatctctcaaaatccaaatgaaatataaaccctcacaaatggcacatgatatc |
353 |
Q |
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| T |
27693367 |
aatctctcaaaatccaaatgaaatataaaccctcacaaatggcacatgatatc |
27693419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 36430192 - 36430229
Alignment:
| Q |
254 |
ttataaatccatatagtacattgaaatcttaaaagtct |
291 |
Q |
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| T |
36430192 |
ttataaatccataaagtactttgaaatcttaaaagtct |
36430229 |
T |
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