View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2719_high_7 (Length: 335)
Name: NF2719_high_7
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 23085680 - 23085799
Alignment:
| Q |
29 |
taatcactcgaaaaaatctgaagccgcagcttcgacaatggtagccataaaactagtaggatccattaaaacagcgtcgattagtaacttgaccactaat |
128 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23085680 |
taatcactcgaaaaaacctgaagttgcggcttcgacaatggtagccataaaactagtaggatccattaaaacaacgtcgattagtaacttgaccactaat |
23085779 |
T |
|
| Q |
129 |
ttgccggtaaatttcatgat |
148 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
23085780 |
ttaccggtaaatttcatgat |
23085799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 23056601 - 23056665
Alignment:
| Q |
85 |
taggatccattaaaacagcgtcgattagtaacttgaccactaatttgccggtaaatttcatgata |
149 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23056601 |
taggatccattaacacaacgtcgattagtaacttgaccactaatttgccggtaaatttcatgata |
23056665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 8255201 - 8255422
Alignment:
| Q |
64 |
caatggtagccataaaactagtaggatccattaaaacagcgtcgattagtaacttgaccactaatttgccggtaaatttcatgatagcacgctttctccc |
163 |
Q |
| |
|
||||||||| ||| || |||| |||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
8255201 |
caatggtagtgatagaattagttggatccattaaaactatgtcgattagtacgtccaccactaatttcccgataaatttcatgaaagcacgctttctccc |
8255300 |
T |
|
| Q |
164 |
ttttgacctcttattattattcgaactttgaagaaccatatccttgaaacacttcacatgaacacaaatccttgcatcagaattaactacatatgaccaa |
263 |
Q |
| |
|
| ||||||| || ||||||||| | ||| ||||| |||||| |||||||| ||||||||||||| | || ||| ||||| | ||||| ||||| |
|
|
| T |
8255301 |
tcttgacctatttttattattcaatatttcaagaatcatatcattgaaacatgacacatgaacacaagacttttcataagaataa---acatacgaccat |
8255397 |
T |
|
| Q |
264 |
ccttcaaattggttcctcgcaacat |
288 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
8255398 |
ccttcaaactggttcctcgcaacat |
8255422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University