View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2719_high_9 (Length: 319)
Name: NF2719_high_9
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 11 - 180
Target Start/End: Complemental strand, 28105991 - 28105822
Alignment:
| Q |
11 |
agaatattatggggggtttgcaaattgaaagaaaggatgatatcctagaggaatggaaaagcttaaaaaatagctagattttcaaaacagcagaactctt |
110 |
Q |
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| T |
28105991 |
agaatattatggggggttttcaaattgaaagaaaggatgatatccttgaggaatggaaaagcttaaaaaatagctagattttcaaaacagcagaactctt |
28105892 |
T |
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| Q |
111 |
aagattgctcttttatcatttatggtttatcaaacaacagtagtctggctagatttatatgacacagatt |
180 |
Q |
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| T |
28105891 |
aagattgctcttttatcatttatggtttatcaaacagcatgagtctggctagatttatatgacacagatt |
28105822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 27966683 - 27967006
Alignment:
| Q |
11 |
agaatattatggggggtttgcaaattgaaagaaaggatgatatcctagaggaatggaaaagcttaaaaaatagctagattttcaaaacagcagaactctt |
110 |
Q |
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| T |
27966683 |
agaatattatggggggtttgaaacttgaaagcaaggatcatatcctagaggaatggaaaagcttaaaaaatagctagtttttaaaaacagcaggactctt |
27966782 |
T |
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| Q |
111 |
aag-------------------attgctcttttatcatttatggtttatcaaacaacagtagtctg----gctagatttatatgacacagatttcccttt |
187 |
Q |
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| T |
27966783 |
aagtagattttatctgacagagattgctcttttatcatttatggtttaacaaacaacaggagtatgtatggctagatttat--gacacagatttcccttt |
27966880 |
T |
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| Q |
188 |
aatcatttattgcttaagtctatcaagctctttgtaggcttgtactatggac---aaaagagttgaccagagtgacctgacagttatgattggtcatgaa |
284 |
Q |
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| T |
27966881 |
aatcatttattgcataagtctataaagctccttgtaggcttgtactatgttctgggtaagatttgaccagagtgacct-acagttatgattggtcatgaa |
27966979 |
T |
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| Q |
285 |
ccactagtggccatcatcgcactaaga |
311 |
Q |
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| T |
27966980 |
ccactagtggccatcatcgcactaaga |
27967006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 28105802 - 28105640
Alignment:
| Q |
168 |
tatgacacagatttccctttaatcatttattgcttaagtctatcaagctctttgtaggcttgtactatg-----------gacaaaagagttgaccagag |
256 |
Q |
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| T |
28105802 |
tatgacacagatttccctttaatcatttattgcataagtctataaagctccttgtaggcttgtactatgttctgggttgggacaaaagagttgaccagag |
28105703 |
T |
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| Q |
257 |
tgacctgacagttatgattggtcatgaaccactagtggccatcatcgcactaagacccaaact |
319 |
Q |
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| T |
28105702 |
tgacctgacagttatgattggtcatgaaccactggtggccatcatcgcactaagacccaaact |
28105640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 10860438 - 10860492
Alignment:
| Q |
256 |
gtgacctgacagttatgattggtcatgaaccactagtggccatcatcgcactaaga |
311 |
Q |
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| T |
10860438 |
gtgacctgacatttatgattggtcatggaccactaatagccatca-cgcactaaga |
10860492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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