View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2719_low_1 (Length: 616)
Name: NF2719_low_1
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 14)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Complemental strand, 3304393 - 3303813
Alignment:
| Q |
18 |
ggtgaagcaggtaagagaagtatcttttcgcatagaagatgtaatcgacgagtatatcatgtgcgaggcgcaaaggatgaaccattctatattcacagca |
117 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304393 |
ggtgaagcaagtaagagaagtatcttttcgcatagaagatgtaatcgacgagtatatcatgtgcgaggcgcaaaggatgaaccattctatattcacagca |
3304294 |
T |
|
| Q |
118 |
acactacaaatgtttcctggtttgctcagaatcatgaatccacaccaccagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304293 |
acactacaaatgtttcctggtttgctcagaatcatgaatccacaccaccagattgcttctcagattcaagacatcaagtcaacacttggtaaaatcaaag |
3304194 |
T |
|
| Q |
218 |
aaagaagaacaagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctattt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304193 |
aaagaagaacaagatttccatttcagtctgataatgaatcaggaagctacagagggtccaaagctcctagaattggtgaccctcgaatggctccctattt |
3304094 |
T |
|
| Q |
318 |
cattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaatgagcacactttggtttctgtggtg |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3304093 |
cattgaagagactcaagttgtgggatttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaatgagcacacgttggtttctgtggtg |
3303994 |
T |
|
| Q |
418 |
gtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagttt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3303993 |
gtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccactttgattgccgctctttcataacagttt |
3303894 |
T |
|
| Q |
518 |
ctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattccaaagg |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3303893 |
ctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatcctattccaaagg |
3303813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 185 - 535
Target Start/End: Complemental strand, 3357644 - 3357297
Alignment:
| Q |
185 |
aagacatcaagtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcc |
284 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||||||||| |||| ||| |||||||||| | || ||||| ||||||| ||||| | |||||||| |
|
|
| T |
3357644 |
aagacatcaagttatcacttgctggaatcaaagaaagaagtacaatgtttgagtttcagtctggaagtggatcagaaagctacagagggactaaagctcc |
3357545 |
T |
|
| Q |
285 |
tagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggt |
384 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
3357544 |
tagaattggtgaccctcgaatggctccttatttcattgaagagactcaagttgtagggtttgagtccccaacaaatgaattggttcgtcttttggtgggt |
3357445 |
T |
|
| Q |
385 |
ggagacaatgagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaa |
484 |
Q |
| |
|
||||| ||||| | || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
3357444 |
ggagagaatgaacggacgttggtttct---gtgctaggcatgggaggactcggaaaaacaactcttgctaagcatgtctttgataacgagttggtgaaaa |
3357348 |
T |
|
| Q |
485 |
gccaatttgattgtcgctctttcataacagtttctcaatcatacactatga |
535 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| || ||||||| |
|
|
| T |
3357347 |
gccactttgattgccgctctttcataacagtttctcaatcctatactatga |
3357297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 164 - 598
Target Start/End: Complemental strand, 3322519 - 3322088
Alignment:
| Q |
164 |
accagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaaga-acaagatttccatttcagtctgataatgaatcaggaa |
262 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| | ||||||||||||||||||||| ||| ||| | ||| ||||| ||||| | || ||||| || |
|
|
| T |
3322519 |
accagattgcttcaaagattaaagacatcaaggaatcacttggtaaaatcaaagaaaaaagtgacatg-tttaagtttcattctgaaagtggatcagaaa |
3322421 |
T |
|
| Q |
263 |
gctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatga |
362 |
Q |
| |
|
||||||||||| | | | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
3322420 |
gctaccgagggactacaactcctagaattggtgaccctcgaatggctctttatttccctgaagagactcaagttgtggggtttgaggatccaacagatga |
3322321 |
T |
|
| Q |
363 |
attgattcgtcgtttggtgggtggagacaatgagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtt |
462 |
Q |
| |
|
|||| | || ||||||| || ||| |||||||| | ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3322320 |
attggtaagtggtttggttgggggaaccaatgagcggatgttgattactgtggt---aggcatgggaggactcggaaaaacaactcttgctaagcatgtt |
3322224 |
T |
|
| Q |
463 |
tttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctcaatcatacactatgagggagttgtttacagaaatgataaaga |
562 |
Q |
| |
|
||| ||||| | ||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
3322223 |
tttaataaccagttggtgaaagaccaatttaattatcgctctttcataacagtttctcaatcatacactataagggaattgttgacagaaatgataaaga |
3322124 |
T |
|
| Q |
563 |
agttgtgcaaggacaagaatgatcctattccaaagg |
598 |
Q |
| |
|
|||| ||||||||||| |||| | ||||||||||| |
|
|
| T |
3322123 |
agttttgcaaggacaacgatgaacgtattccaaagg |
3322088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 294 - 545
Target Start/End: Original strand, 3721513 - 3721761
Alignment:
| Q |
294 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaat |
393 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||| |||| |||| |
|
|
| T |
3721513 |
tgaccctcgaatggctccttatttcattgaagagactcaagttgttgggtttgagtccccaacaaatgaattggttagtcttttggtggggggagccaat |
3721612 |
T |
|
| Q |
394 |
gagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttg |
493 |
Q |
| |
|
|||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
3721613 |
gagcgcacatgggtttctgtgg---taggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataaccagttggtgaaaagccactttg |
3721709 |
T |
|
| Q |
494 |
attgtcgctctttcataacagtttctcaatcatacactatgagggagttgtt |
545 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3721710 |
attgctgctctttcataacagtttctcaatcctacactatgacggagttgtt |
3721761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 163 - 593
Target Start/End: Original strand, 3200782 - 3201209
Alignment:
| Q |
163 |
caccagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaa |
262 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| | |||||||| |||||||||||||||| | | | | || || ||||||| | || || || || |
|
|
| T |
3200782 |
caccagattgcttctgagatacaagacatcaagttatcacttggtgaaatcaaagaaagaagtcaatggtatgcagttaagtctgaaagtggattagaaa |
3200881 |
T |
|
| Q |
263 |
gctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatga |
362 |
Q |
| |
|
| || ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
3200882 |
gttatagaggggttaaagctccaagaattgatgatactcgaatggctccttatttcattcaagagactcaagttgtggggtttgagtccccaaaagatga |
3200981 |
T |
|
| Q |
363 |
attgattcgtcgtttggtgggtggagacaatgagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtt |
462 |
Q |
| |
|
|||| || | | |||||||| ||| || ||||| || ||||||||| || || |||||||||||| |||| ||||| |||||||||| |||||| |
|
|
| T |
3200982 |
attggttagatgcttggtggggggaaccagtgagctcatgttggtttct---gttgttggcatgggaggaatcgggaaaactactcttgctagccatgtt |
3201078 |
T |
|
| Q |
463 |
tttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctcaatcatacactatgagggagttgtttacagaaatgataaaga |
562 |
Q |
| |
|
||| | ||| | | ||||||| | | ||||||||||||| |||| | |||||||||||||| |||||| |||||||| |||| | || ||| |||||| |
|
|
| T |
3201079 |
tttcaaaaccaggttgtgaaaaactactttgattgtcgctatttcgtcacagtttctcaatcctacactctgagggagatgttgattgatatggtaaaga |
3201178 |
T |
|
| Q |
563 |
agttgtgcaaggacaagaatgatcctattcc |
593 |
Q |
| |
|
|||| | || |||||| ||||| |||||||| |
|
|
| T |
3201179 |
agtttttcatggacaacaatgagcctattcc |
3201209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 290 - 598
Target Start/End: Complemental strand, 3221644 - 3221339
Alignment:
| Q |
290 |
ttggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggaga |
389 |
Q |
| |
|
||||||| | |||||||||| | ||||||||||||||| ||||||||||| |||||||| |||| | |||||||| || || ||||||||| ||| |
|
|
| T |
3221644 |
ttggtgatcttcgaatggcttcgcatttcattgaagagaaccaagttgtgggatttgagtcgccaagagatgaattggttagttgtttggtggagggaac |
3221545 |
T |
|
| Q |
390 |
caatgagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaa |
489 |
Q |
| |
|
||||||| || ||| |||||||||| | | ||||||||||| ||||||||||||||| |||||||||||||||||||| | | ||||||| || |
|
|
| T |
3221544 |
aaatgagctcatgttgatttctgtggttg---gtatgggaggacttggaaaaacaactctttctaagcatgtttttgataacaagcttgtgaaaaagcac |
3221448 |
T |
|
| Q |
490 |
tttgattgtcgctctttcataacagtttctcaatcatacactatgagggagttgtttacagaaatgataaagaagttgtgcaaggacaagaatgatccta |
589 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||| || ||||| ||||||||| | || ||| |||||||||| |||||||||| ||||| |||| |
|
|
| T |
3221447 |
tttgattgtcgatgtttcatcacagtttctcaatcgtatgatatgaaggagttgttgattgatatggtaaagaagttttgcaaggacagcaatgagccta |
3221348 |
T |
|
| Q |
590 |
ttccaaagg |
598 |
Q |
| |
|
||||||| |
|
|
| T |
3221347 |
caccaaagg |
3221339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 164 - 593
Target Start/End: Complemental strand, 3310920 - 3310494
Alignment:
| Q |
164 |
accagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaag |
263 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| | |||||||||||||||||||||||| |||| | ||| ||||||||||| | |||||| ||||| |
|
|
| T |
3310920 |
accagattgcttcaaagattaaagacatcaaggaatcacttggtaaaatcaaagaaagaatgacaacacttctgtttcagtctgaaagtgaatctggaag |
3310821 |
T |
|
| Q |
264 |
ctaccgagggtccaaagctcctagaattggtgaccctcgaatggct-ccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatga |
362 |
Q |
| |
|
||| |||| | |||||||||||||||| | | ||||||||||| ||||||| ||||||||||||||||||||||||| ||||||| |||| | |||| |
|
|
| T |
3310820 |
ctatagaggaactaaagctcctagaattgataatactcgaatggcttccctatt-cattgaagagactcaagttgtggggattgagtctccaagagatga |
3310722 |
T |
|
| Q |
363 |
attgattcgtcgtttggtgggtggagacaatgagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtt |
462 |
Q |
| |
|
||||||| || ||||||| ||| || ||| | | ||| ||||| || || |||||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
3310721 |
attgattagttatttggtgtccggaaccagtgacctgatgttgatttct---gttgttggcatgggaggacttggaaaaacgactcttgctaagtatgtt |
3310625 |
T |
|
| Q |
463 |
tttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctcaatcatacactatgagggagttgtttacagaaatgataaaga |
562 |
Q |
| |
|
||| ||||| | | |||||| || |||||||||| || |||| | ||| ||||||| || |||||| |||| || |||| | || ||| |||| | |
|
|
| T |
3310624 |
tttaataaccagtatgtgaaagagcactttgattgtcactatttcttcacaatttctcagtcctacactctgagaaagatgttgattgatatggtaaaca |
3310525 |
T |
|
| Q |
563 |
agttgtgcaaggacaagaatgatcctattcc |
593 |
Q |
| |
|
|||| ||| |||||| ||||| |||||||| |
|
|
| T |
3310524 |
agttttgcgtggacaataatgagcctattcc |
3310494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 3322677 - 3322617
Alignment:
| Q |
12 |
agcataggtgaagcaggtaagagaagtatcttttcgcatagaagatgtaatcgacgagtat |
72 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3322677 |
agcatgggtgaagcaggtaagagaagtatcttttcgcatagaagatgtagttgacgagtat |
3322617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 421 - 566
Target Start/End: Complemental strand, 3198398 - 3198253
Alignment:
| Q |
421 |
ggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctc |
520 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||| ||||||||||||| || |||||||| ||| ||||||||||| | || ||| || ||||| |
|
|
| T |
3198398 |
ggcatgggaggactcggtaaaacgactcttgctaagtatgtttttgataaacatgaggtgaaaaaccactttgattgtcggttttacatcttagcttctc |
3198299 |
T |
|
| Q |
521 |
aatcatacactatgagggagttgtttacagaaatgataaagaagtt |
566 |
Q |
| |
|
|||| |||||| || ||||||||| | || ||||||| |||||| |
|
|
| T |
3198298 |
aatccaacactacgaaggagttgttgattgatatgataacgaagtt |
3198253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3200631 - 3200685
Alignment:
| Q |
18 |
ggtgaagcaggtaagagaagtatcttttcgcatagaagatgtaatcgacgagtat |
72 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||| || || |||||| |
|
|
| T |
3200631 |
ggtgaagcagctaagagaagcatcttttcgcatagaagatgtgattgatgagtat |
3200685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3357817 - 3357776
Alignment:
| Q |
18 |
ggtgaagcaggtaagagaagtatcttttcgcatagaagatgt |
59 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
3357817 |
ggtgaagcagctaagagaagcatcttttcgcatagaagatgt |
3357776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 3311072 - 3311018
Alignment:
| Q |
18 |
ggtgaagcaggtaagagaagtatcttttcgcatagaagatgtaatcgacgagtat |
72 |
Q |
| |
|
||||||||||||| |||| |||||| || |||||||||||||| | ||||||||| |
|
|
| T |
3311072 |
ggtgaagcaggtacgagatgtatctctttgcatagaagatgtagttgacgagtat |
3311018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3221919 - 3221878
Alignment:
| Q |
18 |
ggtgaagcaggtaagagaagtatcttttcgcatagaagatgt |
59 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
3221919 |
ggtgaagcagctaagagaagcatcttttcacatagaagatgt |
3221878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 3280701 - 3280660
Alignment:
| Q |
18 |
ggtgaagcaggtaagagaagtatcttttcgcatagaagatgt |
59 |
Q |
| |
|
|||||||||| ||||||||| ||||||||| ||||||||||| |
|
|
| T |
3280701 |
ggtgaagcagctaagagaagcatcttttcgtatagaagatgt |
3280660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 527
Target Start/End: Complemental strand, 41947256 - 41947158
Alignment:
| Q |
429 |
aggactcggaaaaacaactcttgctaagcatgtttttgataacgatttggtgaaaagccaatttgattgtcgctctttcataacagtttctcaatcata |
527 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||| | | || |||| || ||||||||| | | |||||| ||||||||||||||||| |
|
|
| T |
41947256 |
aggactaggaaaaacaactctttctaagcatgtttttgataacaagcttgtaaaaaagcactttgattgtaggtgtttcatcacagtttctcaatcata |
41947158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 294 - 465
Target Start/End: Complemental strand, 49386603 - 49386435
Alignment:
| Q |
294 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattgattcgtcgtttggtgggtggagacaat |
393 |
Q |
| |
|
||||| |||||||||| | | ||||||||||||| ||||||||||| |||||||| |||| | |||||||| || || ||||||||| ||| |||| |
|
|
| T |
49386603 |
tgaccttcgaatggcttcacaattcattgaagagaaccaagttgtgggatttgagtcgccaagagatgaattggttagttgtttggtggagggaaccaat |
49386504 |
T |
|
| Q |
394 |
gagcacactttggtttctgtggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgttttt |
465 |
Q |
| |
|
||| || ||||||| | ||| | || || |||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
49386503 |
aagctcatgttggtttat---gtgtttggtataggaggacttggaaaaacaactctttctaagcatgttttt |
49386435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 366
Target Start/End: Complemental strand, 41947392 - 41947316
Alignment:
| Q |
290 |
ttggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtccccaacaaatgaattg |
366 |
Q |
| |
|
||||||| | |||||||||| | |||||||| ||||||||||||||||||| |||||||| |||| | |||||||| |
|
|
| T |
41947392 |
ttggtgatcttcgaatggcttcgcatttcattaaagagactcaagttgtgggatttgagtcaccaagagatgaattg |
41947316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 470
Target Start/End: Original strand, 4255764 - 4255820
Alignment:
| Q |
414 |
ggtggtaggcatgggaggactcggaaaaacaactcttgctaagcatgtttttgataa |
470 |
Q |
| |
|
|||||| || ||||| ||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
4255764 |
ggtggttggaatggggggacttgggaaaacaactcttgctaaaaatgtttttgataa |
4255820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University