View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2719_low_5 (Length: 395)
Name: NF2719_low_5
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2719_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 153 - 379
Target Start/End: Original strand, 30568168 - 30568393
Alignment:
| Q |
153 |
gaacaaacttgttttaagcacctaaataaatatatgaaattaattactgatccgactttgatgtaaaaactccattttaattaggtgtggggggatgcga |
252 |
Q |
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| T |
30568168 |
gaacaaacttgttttaagcacctaaataaatatatgaaattaatcactgacccaactttgatggaaaa-ctccattttaattgggtgtggggggatgcga |
30568266 |
T |
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| Q |
253 |
attttctccaatattcaaattcgaggcaagggtgtaggatgttgatatctgccctgcatcattccccaacaccacaccgttagtnnnnnnnntatattgt |
352 |
Q |
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| T |
30568267 |
attttctccaatattcaaagtcgaggcaagggtgtaggattttgatatctgccctgcatccttccccaaaaccacaccgttagtaaaaaaaatatattgt |
30568366 |
T |
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| Q |
353 |
ttttgaatacgtttatatgcatatatt |
379 |
Q |
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| T |
30568367 |
ttttgaatacgtttatatgcatatatt |
30568393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 30568033 - 30568094
Alignment:
| Q |
17 |
tacttataaactctatcaaatatccctacaaccttatctcatacaaacttggcaatactaac |
78 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30568033 |
tactgataaactctatcaaatatccctacaaccttatctcatacaaacttggcaatactaac |
30568094 |
T |
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