View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2719_low_8 (Length: 328)

Name: NF2719_low_8
Description: NF2719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2719_low_8
NF2719_low_8
[»] chr2 (13 HSPs)
chr2 (17-306)||(28105368-28105663)
chr2 (62-301)||(27967113-27967350)
chr2 (171-298)||(10848699-10848823)
chr2 (59-148)||(6099480-6099569)
chr2 (76-149)||(26176304-26176377)
chr2 (233-302)||(9080060-9080126)
chr2 (61-147)||(3697363-3697449)
chr2 (107-149)||(13747643-13747685)
chr2 (63-149)||(16525202-16525288)
chr2 (75-148)||(8192457-8192530)
chr2 (96-149)||(26482117-26482170)
chr2 (75-147)||(28194239-28194311)
chr2 (70-126)||(30943136-30943192)
[»] chr1 (15 HSPs)
chr1 (55-149)||(34228898-34228992)
chr1 (59-148)||(38939227-38939316)
chr1 (59-149)||(6127948-6128038)
chr1 (59-147)||(10526849-10526938)
chr1 (75-149)||(39964529-39964603)
chr1 (63-149)||(44486123-44486209)
chr1 (59-149)||(36428736-36428827)
chr1 (98-149)||(37047009-37047060)
chr1 (59-128)||(6650640-6650710)
chr1 (75-148)||(32729563-32729636)
chr1 (108-149)||(41470621-41470662)
chr1 (62-149)||(952535-952623)
chr1 (59-119)||(2799917-2799977)
chr1 (59-119)||(29753704-29753764)
chr1 (60-147)||(36371496-36371584)
[»] chr4 (12 HSPs)
chr4 (60-149)||(25414177-25414266)
chr4 (59-149)||(29195119-29195209)
chr4 (59-147)||(7949415-7949504)
chr4 (96-149)||(37980146-37980199)
chr4 (96-149)||(56409975-56410028)
chr4 (63-149)||(21344841-21344927)
chr4 (60-149)||(46295121-46295211)
chr4 (96-149)||(17701899-17701952)
chr4 (59-147)||(37109312-37109401)
chr4 (75-148)||(40058958-40059031)
chr4 (59-119)||(4249232-4249292)
chr4 (98-149)||(37455593-37455645)
[»] chr3 (18 HSPs)
chr3 (59-149)||(40268513-40268603)
chr3 (63-149)||(53863833-53863919)
chr3 (60-149)||(30852117-30852206)
chr3 (60-151)||(52696246-52696337)
chr3 (60-149)||(11092132-11092221)
chr3 (59-120)||(46552985-46553046)
chr3 (59-150)||(54990725-54990817)
chr3 (59-126)||(40777060-40777127)
chr3 (107-149)||(42799757-42799799)
chr3 (58-143)||(44745942-44746028)
chr3 (68-113)||(10532874-10532919)
chr3 (68-113)||(10681681-10681726)
chr3 (59-147)||(27259187-27259276)
chr3 (108-149)||(35623277-35623318)
chr3 (59-147)||(46518654-46518743)
chr3 (68-116)||(19154689-19154737)
chr3 (98-150)||(34844394-34844446)
chr3 (54-149)||(44069782-44069878)
[»] chr5 (9 HSPs)
chr5 (60-149)||(14656606-14656695)
chr5 (59-149)||(19373263-19373353)
chr5 (68-149)||(37421309-37421390)
chr5 (98-148)||(15485420-15485470)
chr5 (96-149)||(16172982-16173035)
chr5 (59-143)||(16773837-16773922)
chr5 (75-148)||(19145517-19145590)
chr5 (96-149)||(31669023-31669076)
chr5 (59-115)||(14495766-14495822)
[»] chr6 (7 HSPs)
chr6 (59-149)||(20863399-20863489)
chr6 (60-126)||(9583413-9583479)
chr6 (63-126)||(6691516-6691579)
chr6 (70-148)||(33499492-33499571)
chr6 (107-149)||(6384012-6384054)
chr6 (59-120)||(24256783-24256844)
chr6 (72-148)||(28968145-28968221)
[»] chr8 (4 HSPs)
chr8 (58-147)||(6536546-6536636)
chr8 (63-149)||(40136929-40137014)
chr8 (59-148)||(16317636-16317725)
chr8 (63-149)||(22268899-22268985)
[»] chr7 (13 HSPs)
chr7 (59-149)||(18847384-18847474)
chr7 (59-119)||(21558183-21558243)
chr7 (60-147)||(43215210-43215298)
chr7 (59-149)||(29385704-29385795)
chr7 (60-149)||(5273552-5273642)
chr7 (59-149)||(35328836-35328926)
chr7 (59-149)||(48125136-48125226)
chr7 (59-147)||(26459371-26459460)
chr7 (59-147)||(39631870-39631959)
chr7 (75-119)||(15137608-15137652)
chr7 (59-147)||(15905635-15905723)
chr7 (59-119)||(27313695-27313755)
chr7 (62-149)||(38374563-38374651)
[»] scaffold0065 (1 HSPs)
scaffold0065 (59-149)||(12213-12304)


Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 28105663 - 28105368
Alignment:
Q  17 catcatcgcactaagacccaaactaaattacatcatactttagaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagacctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28105663 catcatcgcactaagacccaaactaaattacatcatactttagaagaagccaaacgaacccaccaaaattgccatcagagagaatctaatctgagacctt 28105564  T
Q  117 gagaggagcataatcgaaggtcccaagccaacaagaagaaagaaaaggtagacaatgcacatatgaattcaaagtta------aagagaacatacaagta 210  Q
    |||| ||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||    
T  28105563 gagaagagtacaatccaaggtcccaagccaacaagaagaaagaaaaggtagacaatgcacatatgaattcaaagttaaagaaaaagagaacatacaagta 28105464  T
Q  211 tacaacacaaaatgcaaatatgaattcaaggtaattcaactattaccttattatattggaaagcattacccatgaatgctggtataaacttccgtg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28105463 tacaacacaaaatgcaaatatgaattcaaggtaattcaactattaccttattatattggaaagcattacccatgaatactggtataaacttccgtg 28105368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 62 - 301
Target Start/End: Original strand, 27967113 - 27967350
Alignment:
Q  62 gaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaacaagaagaaagaaa 161  Q
    ||||||||||||||||||||||||||||| | | |||||||||| ||||||||||||| |||||| |||| ||||||   ||||||||||||||||||||    
T  27967113 gaagccaaactaacccaccaaaattgccaccggggagaatctaaactgagaccttgaggggagcacaatccaaggtcttgagccaacaagaagaaagaaa 27967212  T
Q  162 aggtagacaatgcacatatgaattcaaagttaaagagaacatacaagtatacaacacaaaatgcaaatatgaattcaaggtaattcaactattaccttat 261  Q
    ||||||||| |||||||||||||| ||||||||||| || | | ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27967213 aggtagacagtgcacatatgaatttaaagttaaaga-aaaagagaa-cataaaacacaaaatgcaaatatgaattcaaggtaattcaactattaccttat 27967310  T
Q  262 tatattggaaagcattacccatgaatgctggtataaactt 301  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  27967311 tatattggaaagaattacccatgaatgctggtataaactt 27967350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 10848699 - 10848823
Alignment:
Q  171 atgcacatatgaattcaaagttaaagagaacatacaagtatacaacacaaaatgcaaatatgaattcaaggtaattcaactattaccttattatattgga 270  Q
    |||||||||||||||||| |||||||| || | |   | |||||||||| |||||| ||||||||||||||| |||||||  ||||||||||||||| ||    
T  10848699 atgcacatatgaattcaaggttaaagaaaaaaga---gcatacaacacagaatgcacatatgaattcaaggtgattcaacgtttaccttattatatttga 10848795  T
Q  271 aagcattacccatgaatgctggtataaa 298  Q
    |||||| |||||||||| ||||||||||    
T  10848796 aagcatcacccatgaatactggtataaa 10848823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 6099480 - 6099569
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    ||||||||||||||| |||||| | |||| || | | ||||||| || |||||||||||||||||||| | || ||||||||||||||||    
T  6099480 gaagaagccaaactagcccaccgatattggcagcggggagaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaac 6099569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 26176304 - 26176377
Alignment:
Q  76 ccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||| || ||| ||||||| ||||||||||||||||||||||| |  | ||||||||||| |||||    
T  26176304 ccaccaaaattggcaccagggagaatcgaatctgagaccttgagaggagcacaccccaaggtcccaagtcaaca 26176377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 9080126 - 9080060
Alignment:
Q  233 aattcaaggtaattcaactattaccttattatattggaaagcattacccatgaatgctggtataaacttc 302  Q
    |||||||||||||||||| ||||||   ||||||| | ||||| | ||||||||| ||||||||||||||    
T  9080126 aattcaaggtaattcaacaattacc---ttatatttgtaagcacttcccatgaatactggtataaacttc 9080060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 147
Target Start/End: Original strand, 3697363 - 3697449
Alignment:
Q  61 agaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaa 147  Q
    ||||||||||||||||| || |||||| || |   ||||||| || | ||||||||||||||||||   || |||||||||||||||    
T  3697363 agaagccaaactaacccgccgaaattggcaccgaggagaatcgaaccagagaccttgagaggagcactctccaaggtcccaagccaa 3697449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 13747643 - 13747685
Alignment:
Q  107 ctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||| |||||||||| || |||||||||||||||||    
T  13747643 ctgagaccttgggaggagcatactccaaggtcccaagccaaca 13747685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 16525288 - 16525202
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||| ||||| |||||| || | | ||||||| || |||||||||||||||  ||| | || || ||||||||||||||    
T  16525288 aagccaaactaatccaccgaaattggcaccggggagaatcgaacctgagaccttgagagtcgcacactccaacgtcccaagccaaca 16525202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 8192457 - 8192530
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    |||||| | |||| || ||||| ||||| || |||||||||||||||||||| | || ||| ||||||||||||    
T  8192457 cccaccgacattggcaccagagggaatcgaacctgagaccttgagaggagcacactccaagatcccaagccaac 8192530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 26482170 - 26482117
Alignment:
Q  96 gagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| || |||||||||||||||||||| | ||  ||||||||||||||||    
T  26482170 gagaatcgaacctgagaccttgagaggagcacactcctaggtcccaagccaaca 26482117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 28194239 - 28194311
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaa 147  Q
    |||||| |||||| || ||||||||||| || || ||||||| ||||||||| | || ||| |||||||||||    
T  28194239 cccaccgaaattggcaccagagagaatcgaacctaagaccttaagaggagcacactccaagatcccaagccaa 28194311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 126
Target Start/End: Complemental strand, 30943192 - 30943136
Alignment:
Q  70 actaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagca 126  Q
    |||| |||||| |||||| ||| |||||||||| ||  |||||||||||||||||||    
T  30943192 actagcccaccgaaattggcataagagagaatcaaacttgagaccttgagaggagca 30943136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 34228992 - 34228898
Alignment:
Q  55 tttagaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| ||||||||||| ||||||||||||| || | ||||||||| || ||||||||||||||||| || | ||  ||||||||||||||||    
T  34228992 tttagaataagccaaactagcccaccaaaattggcaccggagagaatccaacctgagaccttgagaggaacacactccgaggtcccaagccaaca 34228898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 38939316 - 38939227
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    ||||||||||||||| |||||| |||||| |||  | ||||||| || | |||||||||||||||||| | || ||||||||||||||||    
T  38939316 gaagaagccaaactagcccaccgaaattgacattggggagaatcaaaccagagaccttgagaggagcacactccaaggtcccaagccaac 38939227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 6127948 - 6128038
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||||||| ||||||||||||| || | | ||||||| ||  |||||||||||||||||||   || |||||||||| ||||||    
T  6127948 gaagaagccaaactagcccaccaaaattggcaccggggagaatcgaacttgagaccttgagaggagcacgctccaaggtcccaaaccaaca 6128038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 10526938 - 10526849
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| ||| ||||||||| |||||| |  ||||||||||| ||||||||||||||| |||||||| | ||  ||||||||||||||    
T  10526938 gaagaagctaaattaacccacccaaattgactccagagagaatcgaatctgagaccttgaggaggagcaaactcccaggtcccaagccaa 10526849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 39964603 - 39964529
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||| |||||| || ||||| ||||| || |||||||||||||||||||| | || |||||| ||||||||||    
T  39964603 cccaccgaaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaaggtcgcaagccaaca 39964529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 44486123 - 44486209
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||||||||| |||||| || | | ||||||  ||| ||||||||||||||||||| | || ||||| |||| ||||||    
T  44486123 aagccaaactaacccaccgaaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggttccaaaccaaca 44486209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 36428827 - 36428736
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||| |||||| |||||| |||||| || | | ||||||| ||  ||||||||||| |||||||||| || ||||| |||||||||||    
T  36428827 gaagaagcaaaactagcccacccaaattggcaccggggagaatcaaacatgagaccttgaggaggagcatactccaaggtaccaagccaaca 36428736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 37047060 - 37047009
Alignment:
Q  98 gaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||| || |||||||||||||||||||| | || |||||||||||||||||    
T  37047060 gaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaaca 37047009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 6650710 - 6650640
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcata 128  Q
    |||||||| ||||||| ||||| |||||| || ||||||||||| || ||||||| |||| ||||||||||    
T  6650710 gaagaagctaaactaatccacctaaattgacaccagagagaatcgaacctgagacattgaggaggagcata 6650640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 32729636 - 32729563
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    |||||| |||||| || || || ||||| || ||||||| |||||||||||| | |||||| ||||||||||||    
T  32729636 cccaccgaaattggcaccatagggaatcgaacctgagactttgagaggagcaaactcgaagatcccaagccaac 32729563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 41470621 - 41470662
Alignment:
Q  108 tgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||||||||||||| || |||||| ||||||||||    
T  41470621 tgagaccttgagaggagcatactccaaggtctcaagccaaca 41470662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 952623 - 952535
Alignment:
Q  62 gaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag-aggagcataatcgaaggtcccaagccaaca 149  Q
    ||||| ||| ||||||||| |||||| |||| | |||||||||| ||||||| ||||| | ||||| | ||  ||||||||||||||||    
T  952623 gaagctaaattaacccacctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaaca 952535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 2799977 - 2799917
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag 119  Q
    |||||||| |||||||||| |  |||||| || ||||||||||| || |||||||||||||    
T  2799977 gaagaagctaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgag 2799917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 29753764 - 29753704
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag 119  Q
    |||||||| |||||||||| |  |||||| || ||||||||||| || |||||||||||||    
T  29753764 gaagaagctaaactaaccctcttaaattggcaccagagagaatcgaacctgagaccttgag 29753704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 36371584 - 36371496
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    ||||||| |||||||||| |  |||||| |||||||||||||| || || ||||||||| |||||||| | ||  |||| |||||||||    
T  36371584 aagaagctaaactaaccccctcaaattggcatcagagagaatcgaacctcagaccttgaggaggagcacactcccaggttccaagccaa 36371496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 25414177 - 25414266
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||||||||||||||||||| || | | ||||||| || ||||||| |||||||||||| | || |||||| ||||||||||    
T  25414177 aagaagccaaactaacccaccaaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggtctcaagccaaca 25414266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 29195209 - 29195119
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||| |||||| || |||||||||| ||| |||||||||| ||  || |||||||||||||||| | || |||||||||||||||||    
T  29195209 gaagaagctaaactagccaaccaaaattggcattagagagaatcgaacttgcgaccttgagaggagcacactccaaggtcccaagccaaca 29195119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 7949415 - 7949504
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| ||| || |||||| |||||| || ||||||||||| || |||||||||||| |||||||| | ||  ||||||||||||||    
T  7949415 gaagaagctaaattagcccacctaaattgacaccagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaa 7949504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 37980146 - 37980199
Alignment:
Q  96 gagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| || |||||||||||||||||||| | || |||||||||||||||||    
T  37980146 gagaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaaca 37980199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 56410028 - 56409975
Alignment:
Q  96 gagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| || |||||||||||||||||||| | || |||||||||||||||||    
T  56410028 gagaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaaca 56409975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 21344927 - 21344841
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||| |||||| |||||| ||   | ||||||  ||  ||||||||||||||||||| | || |||||||||||||||||    
T  21344927 aagccaaactagcccacctaaattgacactggggagaattgaacatgagaccttgagaggagcacactccaaggtcccaagccaaca 21344841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 46295211 - 46295121
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| |||||| |||||| |||||| || | | ||||||| || |||||||||||| |||||||| | || || ||||||||||||||    
T  46295211 aagaagctaaactagcccacccaaattggcaccggggagaatcgaacctgagaccttgaggaggagcacactccaatgtcccaagccaaca 46295121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 17701952 - 17701899
Alignment:
Q  96 gagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| ||||||||||||||||||||||| | || || ||| ||||||||||    
T  17701952 gagaatcgaatctgagaccttgagaggagcacattccaaagtctcaagccaaca 17701899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 37109312 - 37109401
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||| | |||||||||| |  |||||| || ||||||||||| || |||||||||||| |||||||| | ||  ||||||||||||||    
T  37109312 gaagaaactaaactaaccccctcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaa 37109401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 40058958 - 40059031
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    |||||| |||||| || ||||||||||| || |||||||||  ||||||||| | || ||| ||||||||||||    
T  40058958 cccaccgaaattggcaccagagagaatcgaacctgagacctctagaggagcaaactccaagatcccaagccaac 40059031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 4249292 - 4249232
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag 119  Q
    |||||||| |||||||||| |  |||||| || ||||||||||| || |||||||||||||    
T  4249292 gaagaagctaaactaaccccctcaaattggcaccagagagaatcaaacctgagaccttgag 4249232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 37455645 - 37455593
Alignment:
Q  98 gaatctaatctgagaccttgagaggagcataat-cgaaggtcccaagccaaca 149  Q
    ||||| || |||||||||||||||||||||| | | |||||||||||||||||    
T  37455645 gaatcgaacctgagaccttgagaggagcatactccaaaggtcccaagccaaca 37455593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 40268603 - 40268513
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||| ||||||||||||| |||||| |||| | ||||||| || |||||||||| ||||||||  | || |||||||||||||||||    
T  40268603 gaagaagctaaactaacccaccgaaattggcatcggggagaatcgaacctgagaccttaagaggagcccactccaaggtcccaagccaaca 40268513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 53863833 - 53863919
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||||||| | |||||| || ||||||||||  || || ||||||||||||||||| | || |||||||||||||||||    
T  53863833 aagccaaactaacccaacgaaattggcaccagagagaattgaacctaagaccttgagaggagcacactccaaggtcccaagccaaca 53863919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 30852117 - 30852206
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| |||||| |||||||||||||  | | | ||||||  || ||| |||||||| ||||||| ||||||||||||||||||||||    
T  30852117 aagaagctaaactagcccaccaaaattggtaccggggagaatagaacctgcgaccttgaaaggagcaaaatcgaaggtcccaagccaaca 30852206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 52696246 - 52696337
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaacaag 151  Q
    ||||||||||||||| |||||||| |||  ||||||||||||| ||  ||| |||||  ||||| |||| || |||| ||||||||||||||    
T  52696246 aagaagccaaactaatccaccaaatttgatatcagagagaatcaaacttgaaaccttaggaggaacatactccaaggacccaagccaacaag 52696337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 11092132 - 11092221
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||| ||||||||||||||| |||||  || ||| ||||||| ||  |||||||||||||| |||| | |  |||||||||||||||||    
T  11092132 aagaaaccaaactaacccaccgaaattagcaccagggagaatcgaagttgagaccttgagagtagcacactacaaggtcccaagccaaca 11092221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 46553046 - 46552985
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgaga 120  Q
    |||||| | ||||||||||||| |||||| ||  |||||||||| |||||||||||||||||    
T  46553046 gaagaaactaaactaacccacccaaattggcactagagagaatcgaatctgagaccttgaga 46552985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 54990817 - 54990725
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaacaa 150  Q
    |||||||| ||| || |||||| |||||||||||   ||||||| || |||||||||||| ||||||||   || ||||||||||||||||||    
T  54990817 gaagaagctaaattagcccacctaaattgccatcgaggagaatcgaacctgagaccttgaggaggagcacgctccaaggtcccaagccaacaa 54990725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 40777127 - 40777060
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagca 126  Q
    |||||| | |||||| |||||| |||||| ||  |||||||||| || ||||||||||||||||||||    
T  40777127 gaagaaactaaactagcccaccgaaattggcactagagagaatcaaacctgagaccttgagaggagca 40777060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 42799757 - 42799799
Alignment:
Q  107 ctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||||||||||| | || |||||||||||||||||    
T  42799757 ctgagaccttgagaggagcacactccaaggtcccaagccaaca 42799799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 44745942 - 44746028
Alignment:
Q  58 agaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgag-accttgagaggagcataatcgaaggtcccaag 143  Q
    |||||||||||||||| || |||||||||| ||   | ||||||| || ||||| ||| | |||||||||||||| |||||||||||    
T  44745942 agaagaagccaaactagcctaccaaaattggcactggggagaatcgaacctgagaaccataagaggagcataatccaaggtcccaag 44746028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 10532874 - 10532919
Alignment:
Q  68 aaactaacccaccaaaattgccatcagagagaatctaatctgagac 113  Q
    |||||||||||||||||||| |||| | ||||||| ||||||||||    
T  10532874 aaactaacccaccaaaattgacatccgggagaatcaaatctgagac 10532919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 10681681 - 10681726
Alignment:
Q  68 aaactaacccaccaaaattgccatcagagagaatctaatctgagac 113  Q
    |||||||||||||||||||| |||| | ||||||| ||||||||||    
T  10681681 aaactaacccaccaaaattgacatccgggagaatcaaatctgagac 10681726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 27259276 - 27259187
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| |||||||||| |  |||||| |||||||||||||| || |||| |||| || |||||||| | ||  ||||||||||||||    
T  27259276 gaagaagcaaaactaaccccctcaaattgacatcagagagaatcaaacctgaaacctcgaggaggagcacactcccaggtcccaagccaa 27259187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 35623277 - 35623318
Alignment:
Q  108 tgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  35623277 tgagaccttgagaggagcacactccaaggtcccaagccaaca 35623318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 46518743 - 46518654
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| |||||||||| |  |||||| |||||||||||||| || |||| ||||||| |||||||| | ||  || |||||||||||    
T  46518743 gaagaagctaaactaaccccctcaaattggcatcagagagaatcaaacctgaaaccttgaggaggagcacactcccagatcccaagccaa 46518654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Complemental strand, 19154737 - 19154689
Alignment:
Q  68 aaactaacccaccaaaattgccatcagagagaatctaatctgagacctt 116  Q
    ||||||||||||| |||||| ||||| |||||||| || ||||||||||    
T  19154737 aaactaacccacccaaattgacatcaaagagaatcgaacctgagacctt 19154689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 34844446 - 34844394
Alignment:
Q  98 gaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaacaa 150  Q
    ||||| || |||||||||||||||||||| | || |||||| |||||||||||    
T  34844446 gaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacaa 34844394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 44069878 - 44069782
Alignment:
Q  54 ctttagaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaaca 149  Q
    |||| |||||||| |||||| |||||| |||||| || | || |||||| || |||||||||||| |||||||| | || ||| || ||||||||||    
T  44069878 cttttgaagaagctaaactagcccacctaaattggcaccggaaagaatcaaacctgagaccttgaggaggagcacactccaagatctcaagccaaca 44069782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 14656606 - 14656695
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||| ||| ||||||| ||||| ||||||| | |||| || |||||||||||||||||||| | || |||||| ||||||||||    
T  14656606 aagaagccaagctatcccaccataattggcatcagaaacaatcgaacctgagaccttgagaggagcaaactccaaggtctcaagccaaca 14656695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 19373353 - 19373263
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||| ||||||||| |||||| ||||||| |||||| || || | |||||||||| |||| | || |||||| ||||||||||    
T  19373353 gaagaagccaaagtaacccaccgaaattgacatcagatagaatcgaacctaaaaccttgagagtagcacactccaaggtctcaagccaaca 19373263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 37421390 - 37421309
Alignment:
Q  68 aaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||| ||||||||||||  || ||| ||||||| ||||||||||| ||||||||||| | || |||||||| || |||||    
T  37421390 aaactagcccaccaaaattagcaccagggagaatcgaatctgagaccgtgagaggagcaaactctaaggtcccgagtcaaca 37421309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 15485420 - 15485470
Alignment:
Q  98 gaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    ||||| || |||||||||||||||||||| | || ||||||||||||||||    
T  15485420 gaatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaac 15485470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 16172982 - 16173035
Alignment:
Q  96 gagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| || |||||||||||||||||||| | || |||||| ||||||||||    
T  16172982 gagaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaaca 16173035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 16773922 - 16773837
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaag 143  Q
    |||||||| ||| || |||||| |||||| |||||||||||||| || ||||||||| || |||||||| | ||  ||||||||||    
T  16773922 gaagaagctaaattagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaag 16773837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 19145517 - 19145590
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    |||||| |||||| || ||||| ||||| || | |||||||||||||||||||| || ||| ||||||| ||||    
T  19145517 cccaccgaaattggcaccagagggaatcgaaccggagaccttgagaggagcatactccaagatcccaagtcaac 19145590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 31669023 - 31669076
Alignment:
Q  96 gagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| || || ||||||||||||||||| | || |||||||||||||||||    
T  31669023 gagaatcgaacctaagaccttgagaggagcagactccaaggtcccaagccaaca 31669076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 14495766 - 14495822
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagacct 115  Q
    |||||||| |||||| |||| | |||||| |||| ||||||||| ||||||||||||    
T  14495766 gaagaagctaaactagcccatctaaattggcatcggagagaatcaaatctgagacct 14495822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 20863489 - 20863399
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||| ||| |||||| |||||| ||| |||||||||| ||||||||||||||| |||||||| | || || ||||||||||||||    
T  20863489 gaagaagccaa-ctagcccacccaaattggcattagagagaatcaaatctgagaccttgaggaggagcacactccaaagtcccaagccaaca 20863399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Complemental strand, 9583479 - 9583413
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagca 126  Q
    ||||||| ||||||||||||| |||||| || ||||||||||| ||   ||||||||||||||||||    
T  9583479 aagaagctaaactaacccaccgaaattggcaccagagagaatcgaactggagaccttgagaggagca 9583413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 6691516 - 6691579
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagca 126  Q
    ||||||||||| || ||| |||||| || | ||||||||| || ||||||||||||||||||||    
T  6691516 aagccaaactaccctaccgaaattggcaccggagagaatcgaacctgagaccttgagaggagca 6691579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 33499571 - 33499492
Alignment:
Q  70 actaacccaccaaaattgccatcagagagaatct-aatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    |||| |||||| |||||| || ||||| |||||| || |||||||||||||||||||| | || ||| ||||||||||||    
T  33499571 actagcccaccgaaattgacaccagagggaatctgaacctgagaccttgagaggagcaaactccaagatcccaagccaac 33499492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 6384012 - 6384054
Alignment:
Q  107 ctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||||||||||| | || |||||||||||||||||    
T  6384012 ctgagaccttgagaggagcacactccaaggtcccaagccaaca 6384054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 24256783 - 24256844
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgaga 120  Q
    |||||||| ||||||||| ||| |||||| || ||||||||||| ||  |||||||||||||    
T  24256783 gaagaagctaaactaacctacctaaattgacaccagagagaatcgaacttgagaccttgaga 24256844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 28968145 - 28968221
Alignment:
Q  72 taacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    ||||||||| |||||| |   |||||||||| ||||||||||||  ||||||||| | || ||| ||||||||||||    
T  28968145 taacccaccgaaattgacgctagagagaatcgaatctgagacctctagaggagcaaactccaagatcccaagccaac 28968221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 6536636 - 6536546
Alignment:
Q  58 agaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    ||||||||| ||| ||||||||| |||||| || ||||||||||  || |||||||||||| |||||||| | ||  ||||||||||||||    
T  6536636 agaagaagctaaattaacccacctaaattggcaccagagagaattgaacctgagaccttgaggaggagcacactcctaggtcccaagccaa 6536546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 40136929 - 40137014
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||| |||| |||||| |||||| || | | ||||||| || |||||||||||||||||||| | || |||||||||||||||||    
T  40136929 aagccagactagcccaccgaaattggcaccgg-gagaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaaca 40137014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 16317725 - 16317636
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaac 148  Q
    |||||||| |||||| |||||  |||||| || ||||||||||| ||  ||||||  ||||||||||| | || ||||||||||||||||    
T  16317725 gaagaagctaaactagcccactgaaattggcaccagagagaatcgaacatgagacgctgagaggagcacactctaaggtcccaagccaac 16317636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 22268899 - 22268985
Alignment:
Q  63 aagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||| ||||||||||||| |||| | || | |||| |||| ||  ||||||||||||| ||||| | || |||||||||||||||||    
T  22268899 aagctaaactaacccacctaaatgggcaccggagaaaatcaaacttgagaccttgagaagagcacactccaaggtcccaagccaaca 22268985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 18847384 - 18847474
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||||||| |||||| ||||||||| || | ||||||| | ||  ||||| ||||||||||||| | |||||| || ||||||||||    
T  18847384 gaagaagccaaattaacccgccaaaattggcaccggagagaaacgaacttgagatcttgagaggagcacactcgaagatctcaagccaaca 18847474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 21558243 - 21558183
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag 119  Q
    |||||||| ||| ||||||||| |||||| || ||||||||||| || |||||||||||||    
T  21558243 gaagaagctaaattaacccacctaaattggcaccagagagaatcgaacctgagaccttgag 21558183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 43215298 - 43215210
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    ||||||| |||||||||| |  |||||| ||| |||||||||| || |||||||||||| |||||||| | ||  ||||||||||||||    
T  43215298 aagaagctaaactaaccccctcaaattggcataagagagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaa 43215210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 29385704 - 29385795
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||| ||| || |||||| |||||| || || |||||||| || |||||||||||| |||||||| | || || ||||||||||||||    
T  29385704 gaagaagcaaaagtagcccacccaaattggcaccaaagagaatcaaacctgagaccttgaggaggagcacactccaaagtcccaagccaaca 29385795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 5273552 - 5273642
Alignment:
Q  60 aagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag-aggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||| |||||| |||||| |||||| || | |||| |||| || || |||||||||| ||||||| | || |||||||||||||||||    
T  5273552 aagaagctaaactagcccacccaaattggcaccggagacaatcaaacctaagaccttgaggaggagcacactctaaggtcccaagccaaca 5273642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 35328836 - 35328926
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||||||| ||||| ||||||| ||   || |||||| || || | |||||||||| |||| | |||||||| |||||||||||    
T  35328836 gaagaagccaaactagcccactaaaattggcactggaaagaatcaaacctaaaaccttgagagaagcacactcgaaggttccaagccaaca 35328926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 48125136 - 48125226
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaaca 149  Q
    ||||||||||||||| |||||| |||||| || | | || |||  || ||||||||||  |||||||| | || |||||||||||||||||    
T  48125136 gaagaagccaaactagcccaccgaaattggcaccggggaaaattgaacctgagaccttcggaggagcacactccaaggtcccaagccaaca 48125226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 26459371 - 26459460
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| ||||||||||    |||||| || ||||||||||| || |||||||||||| |||||||| | ||  ||||||||||||||    
T  26459371 gaagaagctaaactaaccccttcaaattggcaccagagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaa 26459460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 39631959 - 39631870
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttga-gaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| |||||||||| |  |||||| ||  |||||||||| || |||||||||||| ||||||| || ||  ||||||||||||||    
T  39631959 gaagaagctaaactaaccccctcaaattggcacaagagagaatcgaacctgagaccttgaggaggagcttactcccaggtcccaagccaa 39631870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 15137652 - 15137608
Alignment:
Q  75 cccaccaaaattgccatcagagagaatctaatctgagaccttgag 119  Q
    |||||| |||||| || |||||||||||||| |||||||||||||    
T  15137652 cccacccaaattgacaccagagagaatctaacctgagaccttgag 15137608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 15905635 - 15905723
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgagaggagcataatcgaaggtcccaagccaa 147  Q
    |||||||| ||| ||||||||| |||||| ||| || ||||||| || |||||||||   |||||||| | ||  ||||||||||||||    
T  15905635 gaagaagctaaattaacccacccaaattgacattagggagaatcgaacctgagacctaaggaggagcacactcccaggtcccaagccaa 15905723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 27313695 - 27313755
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag 119  Q
    |||||||| ||| || | |||| |||||| |||||||||||||| ||||||| ||||||||    
T  27313695 gaagaagctaaattagctcacctaaattggcatcagagagaatcgaatctgaaaccttgag 27313755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 38374563 - 38374651
Alignment:
Q  62 gaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag-aggagcataatcgaaggtcccaagccaaca 149  Q
    ||||| |||||| |||||| |||||| || | | ||||||| || || |||||||||| ||||||| | || |||||||||||||||||    
T  38374563 gaagctaaactagcccacctaaattggcaccggggagaatcgaacctaagaccttgaggaggagcacactctaaggtcccaagccaaca 38374651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 12304 - 12213
Alignment:
Q  59 gaagaagccaaactaacccaccaaaattgccatcagagagaatctaatctgagaccttgag-aggagcataatcgaaggtcccaagccaaca 149  Q
    |||||||| ||||||| ||||| ||||||  | |||||||||| |||  | |||||||||| ||||||| | || |||||||||||||||||    
T  12304 gaagaagctaaactaatccacctaaattgataccagagagaatttaactttagaccttgaggaggagcaaactccaaggtcccaagccaaca 12213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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