View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2720_high_3 (Length: 345)

Name: NF2720_high_3
Description: NF2720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2720_high_3
NF2720_high_3
[»] chr3 (7 HSPs)
chr3 (111-345)||(19647224-19647458)
chr3 (118-273)||(3170134-3170292)
chr3 (19-70)||(19647499-19647550)
chr3 (138-273)||(27547227-27547361)
chr3 (153-259)||(21587185-21587291)
chr3 (123-195)||(44126751-44126824)
chr3 (138-193)||(13100788-13100844)
[»] chr7 (2 HSPs)
chr7 (120-273)||(23818710-23818863)
chr7 (170-259)||(22477038-22477127)
[»] chr2 (7 HSPs)
chr2 (275-344)||(18772943-18773012)
chr2 (124-195)||(21294925-21294997)
chr2 (156-244)||(17830753-17830842)
chr2 (123-254)||(25232017-25232148)
chr2 (19-60)||(19084708-19084749)
chr2 (124-195)||(21289627-21289699)
chr2 (19-59)||(7394644-7394684)
[»] chr8 (5 HSPs)
chr8 (138-258)||(28350603-28350724)
chr8 (19-60)||(28350474-28350515)
chr8 (118-177)||(29185553-29185612)
chr8 (120-176)||(17703045-17703101)
chr8 (19-59)||(22274954-22274994)
[»] chr5 (9 HSPs)
chr5 (138-258)||(25214454-25214575)
chr5 (138-258)||(25278604-25278725)
chr5 (119-273)||(24213307-24213461)
chr5 (119-195)||(24228300-24228377)
chr5 (138-244)||(12026314-12026420)
chr5 (19-54)||(28663534-28663569)
chr5 (19-54)||(29742040-29742075)
chr5 (19-60)||(25590181-25590222)
chr5 (123-218)||(7823115-7823210)
[»] chr6 (1 HSPs)
chr6 (119-195)||(19441157-19441234)
[»] chr4 (2 HSPs)
chr4 (19-60)||(17350048-17350089)
chr4 (21-54)||(12753587-12753620)
[»] chr1 (3 HSPs)
chr1 (119-195)||(11444049-11444126)
chr1 (128-254)||(29547774-29547900)
chr1 (128-195)||(29530177-29530245)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 111 - 345
Target Start/End: Complemental strand, 19647458 - 19647224
Alignment:
Q  111 tatatatcattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647458 tatatatcattacttcacaagtgtgtcctttacattacaacttgagttctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatca 19647359  T
Q  211 ctaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccacgtacaataatcgatttctagcttctataggaacaaac 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647358 ctaacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccacgtacaataatcgatttctagcttctataggaacaaac 19647259  T
Q  311 acatctatcctaggtaaactaatttagtatacaac 345  Q
    ||||||||||| |||||||| |||| |||||||||    
T  19647258 acatctatccttggtaaactgatttggtatacaac 19647224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 118 - 273
Target Start/End: Original strand, 3170134 - 3170292
Alignment:
Q  118 cattacttcacaagtgtgtcctttacattacaacttgagtcctatttatagga------tacaaatagtaagtgaatgatcaaatgaaattaaacatcac 211  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||    
T  3170134 cattacttca-aagtgtgttttttacattacaacttgagtcctatttataggtatagggtacaaatagtaagtgaatgatcaaatgtaattaaacatcac 3170232  T
Q  212 taacaatccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 273  Q
    |||||||||||||| ||||| |||||||  ||| |||||||| ||||| |||| ||||||||    
T  3170233 taacaatccattcattaatgagagttat--gaatgtggaagaacaaggatatgaacatccac 3170292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 19647550 - 19647499
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaagttgcattgtat 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647550 agagcttcgtgctaataacgtgttatgaaattaatcaaaagttgcattgtat 19647499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 273
Target Start/End: Complemental strand, 27547361 - 27547227
Alignment:
Q  138 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 236  Q
    |||||||| | ||| ||||||||||||||||||||| ||| || | || |||||||| ||| ||| ||| | |||||||||| |||||| |||||||| |    
T  27547361 ctttacatcaaaacatgagtcctatttataggataccaatcagcaggtaaatgatcacatgcaatcaaagagcactaacaattcattcactaatgggaat 27547262  T
Q  237 tataagaacgtggaagatcaaggttatggacatccac 273  Q
    ||||||||  || ||||||||  | ||||||||||||    
T  27547261 tataagaatttgaaagatcaa--taatggacatccac 27547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 21587185 - 21587291
Alignment:
Q  153 tgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaa 251  Q
    |||||||||||||||||| |||||| || ||||||||||||||| | | ||||  ||||||||| || | |||| ||||||| |||||| ||| ||||||    
T  21587185 tgagtcctatttataggacacaaatgagcaagtgaatgatcaaa-gcagttaaggatcactaaccatactttcactaatgggggttataggaaggtggaa 21587283  T
Q  252 gatcaagg 259  Q
    ||| ||||    
T  21587284 gattaagg 21587291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 195
Target Start/End: Original strand, 44126751 - 44126824
Alignment:
Q  123 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    ||||||||||||||| || |||||||||  |  ||||||||||||||| |||||| || |||||||||||||||    
T  44126751 cttcacaagtgtgtcattcacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa 44126824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 13100844 - 13100788
Alignment:
Q  138 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatca 193  Q
    |||||||| | ||| ||||||||||||||||||||||||| || |||||||||||||    
T  13100844 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgatca 13100788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 120 - 273
Target Start/End: Original strand, 23818710 - 23818863
Alignment:
Q  120 ttacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatgaaattaaacatcactaacaatc 219  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||    
T  23818710 ttacttcacaagtgtgtactttacattacaacttgagtcctatttataggatacaaatagtaagtgaatgatcaaatttaattaaacatcactaagaatc 23818809  T
Q  220 cattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 273  Q
    || ||| ||||||||||||||||||  ||||||||||||| |||||||||||||    
T  23818810 cactcactaatgggagttataagaatatggaagatcaaggatatggacatccac 23818863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 22477038 - 22477127
Alignment:
Q  170 atacaaatagtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaacgtggaagatcaagg 259  Q
    ||||||||| ||| |||||| ||||||| |||||||||||  | ||| | |||||| |||||| |||||||||||  |||||||||||||    
T  22477038 atacaaatattaattgaatggtcaaatgtaattaaacatccttgacagttcattcactaatggaagttataagaatatggaagatcaagg 22477127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 344
Target Start/End: Original strand, 18772943 - 18773012
Alignment:
Q  275 tacaataatcgatttctagcttctataggaacaaacacatctatcctaggtaaactaatttagtatacaa 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||    
T  18772943 tacaataatcgatttctagcttctataggaacaaacacatctatccttggtaaactgatttggaatacaa 18773012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 21294925 - 21294997
Alignment:
Q  124 ttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    |||||||||||||| || |||||||||| | ||||||||||||||||||||||| || |||||||||||||||    
T  21294925 ttcacaagtgtgtcattcacattacaacataagtcctatttataggatacaaatgagcaagtgaatgatcaaa 21294997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 17830753 - 17830842
Alignment:
Q  156 gtcctatttataggatacaaata-gtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagttataagaa 244  Q
    |||||||||||| |||||||||| | ||||||| ||||| ||| ||| ||| | |||||||||| |||||| |||| |||||||||||||    
T  17830753 gtcctatttatatgatacaaataagcaagtgaaagatcacatgtaatcaaagagcactaacaattcattcactaattggagttataagaa 17830842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 25232148 - 25232017
Alignment:
Q  123 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatcca 221  Q
    |||| ||||||||| |||||||||||||  |  ||||||||||| ||| |||||| || |||||||||||||||   ||||||  | ||||||| || ||    
T  25232148 cttctcaagtgtgttctttacattacaatatatgtcctatttatgggacacaaatgagcaagtgaatgatcaaa-ccaattaaggaccactaaccataca 25232050  T
Q  222 ttcagtaatgggagttataagaacgtggaagat 254  Q
    || | |||||||||||||| ||| |||||||||    
T  25232049 tttactaatgggagttataggaaggtggaagat 25232017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 19084749 - 19084708
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaagt 60  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  19084749 agagcttcgtgctgataacgtgttatgaaattgatcaaaagt 19084708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 21289627 - 21289699
Alignment:
Q  124 ttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    |||| ||||||||| || |||||||||  | |||||||||||||||| |||||| || |||||||||||||||    
T  21289627 ttcataagtgtgtcattcacattacaatataagtcctatttataggacacaaatgagcaagtgaatgatcaaa 21289699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 7394644 - 7394684
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaag 59  Q
    |||| |||||||| |||||||||||||||||||||| ||||    
T  7394644 agagtttcgtgctgataacgtgttatgaaattaatccaaag 7394684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 28350603 - 28350724
Alignment:
Q  138 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 235  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  28350603 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 28350702  T
Q  236 ttataagaacgtggaagatcaag 258  Q
    |||| ||||| ||||||||||||    
T  28350703 ttat-agaacttggaagatcaag 28350724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 28350474 - 28350515
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaagt 60  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  28350474 agagcttcgtgctgataacgtgttatgaaattaatccaaagt 28350515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 29185553 - 29185612
Alignment:
Q  118 cattacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat 177  Q
    |||||||||||||||||||  ||||||||||||  |  ||||||||||||||| ||||||    
T  29185553 cattacttcacaagtgtgttttttacattacaatatatgtcctatttataggacacaaat 29185612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 17703101 - 17703045
Alignment:
Q  120 ttacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaa 176  Q
    ||||||||| ||||||| |||||||| ||||  |  |||||||||||||||||||||    
T  17703101 ttacttcactagtgtgtgctttacatgacaatgtatgtcctatttataggatacaaa 17703045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 22274994 - 22274954
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaag 59  Q
    ||||||||||| | |||||||||||||||||||||| ||||    
T  22274994 agagcttcgtgttgataacgtgttatgaaattaatccaaag 22274954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 25214454 - 25214575
Alignment:
Q  138 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 235  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  25214454 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 25214553  T
Q  236 ttataagaacgtggaagatcaag 258  Q
    |||| ||||| ||||||||||||    
T  25214554 ttat-agaacttggaagatcaag 25214575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 25278604 - 25278725
Alignment:
Q  138 ctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccatt-cagtaatgggag 235  Q
    |||||||| | ||| ||||||||||||||||||||||||| || ||||||||| ||| ||| ||| ||| | |||||||||| |||| || |||||||||    
T  25278604 ctttacatcaaaacatgagtcctatttataggatacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaattcattccactaatgggag 25278703  T
Q  236 ttataagaacgtggaagatcaag 258  Q
    |||| ||||| ||||||||||||    
T  25278704 ttat-agaacttggaagatcaag 25278725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 24213307 - 24213461
Alignment:
Q  119 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaa 217  Q
    |||||||||||||| ||| |||||||||||||  |  ||||||||||||||| |||||| || |||||||||||||||   ||||||| | || |||| |    
T  24213307 attacttcacaagtatgtactttacattacaatataggtcctatttataggacacaaatgagcaagtgaatgatcaaa-ccaattaaagaccaataacca 24213405  T
Q  218 tccattcagtaatgggagttataagaacgtggaagatcaaggttatggacatccac 273  Q
    | |||| | ||||||  |||||||||| ||||||||| ||||  || |||||||||    
T  24213406 tacatttactaatggaggttataagaaggtggaagattaaggccatcgacatccac 24213461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 24228300 - 24228377
Alignment:
Q  119 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    |||||||||||||||||| |||||||||||||  |   ||||||||||||||||||| | || |||||||||||||||    
T  24228300 attacttcacaagtgtgtactttacattacaatatagatcctatttataggatacaattgagcaagtgaatgatcaaa 24228377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 244
Target Start/End: Original strand, 12026314 - 12026420
Alignment:
Q  138 ctttacattacaacttgagtcctatttataggatacaaata-gtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcagtaatgggagt 236  Q
    |||||||| | ||| |||||| |||||| |||||||||||| | |||||||||||| | || ||| ||| | |||||||||| |||||| ||||| ||||    
T  12026314 ctttacatcaaaacatgagtcttatttagaggatacaaataagcaagtgaatgatcca-tgcaatcaaagagcactaacaattcattcactaatgagagt 12026412  T
Q  237 tataagaa 244  Q
    ||||||||    
T  12026413 tataagaa 12026420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 28663534 - 28663569
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatc 54  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28663534 agagcttcgtgctgataacgtgttatgaaattaatc 28663569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 29742040 - 29742075
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatc 54  Q
    ||||||||||||| ||||||||||||||||||||||    
T  29742040 agagcttcgtgctgataacgtgttatgaaattaatc 29742075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25590222 - 25590181
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaagt 60  Q
    |||||| |||||| |||||||||||||||||||||| |||||    
T  25590222 agagctccgtgctgataacgtgttatgaaattaatctaaagt 25590181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 7823115 - 7823210
Alignment:
Q  123 cttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaat 218  Q
    |||||||||||| || ||||||| | ||| | |||||||||||||||| |||||| || ||||||||| ||| ||| ||| ||| | ||||||||||    
T  7823115 cttcacaagtgtttc-tttacatcaaaacataagtcctatttataggacacaaataagcaagtgaatgttcacatgcaatcaaagagcactaacaat 7823210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 19441157 - 19441234
Alignment:
Q  119 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    |||||||||||||||||||| ||| |||||||  |  ||||||||||||||| |||||| || |||||||||||||||    
T  19441157 attacttcacaagtgtgtccgttatattacaatatatgtcctatttataggacacaaatgagcaagtgaatgatcaaa 19441234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 17350089 - 17350048
Alignment:
Q  19 agagcttcgtgctaataacgtgttatgaaattaatcaaaagt 60  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  17350089 agagcttcgtgctgataacgtgttatgaaattgatcaaaagt 17350048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 12753587 - 12753620
Alignment:
Q  21 agcttcgtgctaataacgtgttatgaaattaatc 54  Q
    ||||||||||| ||||||||||||||||||||||    
T  12753587 agcttcgtgctgataacgtgttatgaaattaatc 12753620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Original strand, 11444049 - 11444126
Alignment:
Q  119 attacttcacaagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    ||||||||||||||||||  || |||||| ||  | |||||||||||||||| |||||| || |||||||||||||||    
T  11444049 attacttcacaagtgtgtaattcacattataatataagtcctatttataggacacaaatgagcaagtgaatgatcaaa 11444126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 29547900 - 29547774
Alignment:
Q  128 caagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaatgaaattaaacatcactaacaatccattcag 226  Q
    ||||||||| |||||||||||||  |  ||||||||||||||| | |||| || |||||||||||||||  |||||||  | ||||||| || |||| |     
T  29547900 caagtgtgttctttacattacaatataggtcctatttataggacataaatgagcaagtgaatgatcaaa-caaattaaggaccactaaccatgcatttac 29547802  T
Q  227 taatgggagttataagaacgtggaagat 254  Q
    |||||||  ||||| ||| |||||||||    
T  29547801 taatggggattataggaaggtggaagat 29547774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 29530245 - 29530177
Alignment:
Q  128 caagtgtgtcctttacattacaacttgagtcctatttataggatacaaat-agtaagtgaatgatcaaa 195  Q
    ||||||||| |||||||||||||  |  |||||||||||| || |||||| || |||||||||||||||    
T  29530245 caagtgtgttctttacattacaatataggtcctatttatatgacacaaatgagcaagtgaatgatcaaa 29530177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University