View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2720_low_6 (Length: 250)
Name: NF2720_low_6
Description: NF2720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2720_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 23159640 - 23159410
Alignment:
| Q |
16 |
atgaagaaaatgaggaccaaactatgagacaaatataataaaaggaataaatgaacataaccaaaaagaagaagaaatgagcgccctctcgttgctgccg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23159640 |
atgaagaaaatgaggaccaaactatgagacaaatataataaaaggaataaatgaacataacaaaaaagaagaagaaatgagcgccctctcgttgctgccg |
23159541 |
T |
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| Q |
116 |
gtggcactctaactacggtgattgcacccttgcgcttacgtcattgtgagacgaccacttcatcccccttttgccgatgctttctctcactgcagtaacc |
215 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23159540 |
gtggcactctaactacggtggttgc-cccttgcgcttacgtcattgtgagacgaccacttcattccccttttgccgatgctttctctcactgcagtaacc |
23159442 |
T |
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| Q |
216 |
aaatttaggacaaacactaatggttggattta |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
23159441 |
aaatttaggacaaacactaatggttggattta |
23159410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 20023132 - 20022905
Alignment:
| Q |
16 |
atgaagaaaatgaggaccaaactatgagacaaatataataaaaggaataaatgaacataaccaaaaagaagaagaaatgagcgccctctcgttgctgccg |
115 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
20023132 |
atgaagaaaatgaggaccaaacaatgagacaaatagaataaaaggaataaattaccataaccaaaaagaagaa---atgagccccctctcgttgctgccg |
20023036 |
T |
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| Q |
116 |
gtggcactctaactacggtgattgcacccttgcgcttacgtcattgtgagacgaccacttcatcccccttttgccgatgctttctctcactgcagtaacc |
215 |
Q |
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|||||| ||||||||| | ||| || |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
20023035 |
gtggcattctaactaccgcgatcgc-cccttgcgcttatgtcattgtgagacgaccactacatcccccttttgccgatgctttatctcactgccataacc |
20022937 |
T |
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| Q |
216 |
aaatttaggacaaacactaatggttggattta |
247 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
20022936 |
aaatttaggaaaaacactaatggttggattta |
20022905 |
T |
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Back To:
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