View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2721_high_1 (Length: 587)
Name: NF2721_high_1
Description: NF2721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2721_high_1 |
 | |
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| [»] chr8 (13 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 19 - 587
Target Start/End: Original strand, 3033449 - 3034015
Alignment:
| Q |
19 |
acatagaacattcgaacatagaaagaccagtagagatcacttacgtgctttaattttgatagacac-aaaaaatatctatttactaccaaaatcatatgg |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3033449 |
acatagaacattcaaacatagaaagaccagtagaga---cttacgtgctttaattttgatagacacgaaaaaatatctatttactaccaaaatcatatgg |
3033545 |
T |
|
| Q |
118 |
accaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgttgtgtagctcagtgaggttatgtg |
217 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3033546 |
accaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgttgtgtagctcagtgaggtgatgtg |
3033643 |
T |
|
| Q |
218 |
gcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaaggtccaagtctacaaaaatattatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033644 |
gcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaaggtccaagtctacaaaaatattatt |
3033743 |
T |
|
| Q |
318 |
caaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat--nnnnnnnnnctatatggatcgaattgatt |
415 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3033744 |
caaacgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactataaaaaaaaaaactatatggatcgaattgatt |
3033843 |
T |
|
| Q |
416 |
acaaaatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactata |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033844 |
acaaaatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactata |
3033943 |
T |
|
| Q |
516 |
gccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
587 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3033944 |
gccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
3034015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 3041083 - 3041447
Alignment:
| Q |
19 |
acatagaacattcgaacatagaaagaccagtagagatcacttacgtgctttaattttgatagacacaaaaaatatctatttactaccaaaatcatatgga |
118 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
3041083 |
acatagaacattcaaacatagaaaaaccagtagaga---cttacgtgctttaattttgatagacacaaaa--tatctatttactaccaaaatcatatgga |
3041177 |
T |
|
| Q |
119 |
ccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgttgtgtagctcagtgaggttatgtgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3041178 |
ccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgttgtgtagctcagtgaggtgatgtgg |
3041275 |
T |
|
| Q |
219 |
caaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaa----ggtccaagtctacaaaaatatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| | |||||||||||||||||| ||| |
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| T |
3041276 |
caaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcatcaaacttgatccaggttggtccaagtctacaaaaagatt |
3041375 |
T |
|
| Q |
315 |
attcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
386 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |
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|
| T |
3041376 |
attcaaatgatagcaagactaatgaataagtgctggaaaatttatggaaacaaacaatagctacaatactat |
3041447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 94 - 386
Target Start/End: Complemental strand, 25125754 - 25125464
Alignment:
| Q |
94 |
ctatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25125754 |
ctatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgt |
25125657 |
T |
|
| Q |
194 |
tgtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaag |
293 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
25125656 |
tgtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcataaaacttgatcaag |
25125557 |
T |
|
| Q |
294 |
gtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
386 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||| |
|
|
| T |
25125556 |
gtccaagtctacaaaaagattattcaaatgatagaaagactaatgaataagtgcttgaaaatttatggaaacaaacaatagctacaatactat |
25125464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 396 - 587
Target Start/End: Original strand, 3041863 - 3042055
Alignment:
| Q |
396 |
ctatatggatcgaattgattacaaaatctaaacatggcttcctctctactcctttccttt-ctcctatactcgctgattcttcaatccgtcggtgttgta |
494 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
3041863 |
ctatatggatgaaattgattacaaaatctaaacatcgcttcctctctactcctttccttttctcctatactcgctgattcttcaatccatcggtgttgta |
3041962 |
T |
|
| Q |
495 |
gctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3041963 |
gctcaaaccaatagtactatagccattggtgattcttttactgctgacaccagcaactctacatggttactttcaccttctggtgactttgcc |
3042055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 420 - 587
Target Start/End: Original strand, 3054710 - 3054877
Alignment:
| Q |
420 |
aatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagcca |
519 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| ||||||| || | || ||||||||||||||| || |||| ||||||||||||| | |||||||||| |
|
|
| T |
3054710 |
aatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcca |
3054809 |
T |
|
| Q |
520 |
ttggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
587 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
3054810 |
ttggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcc |
3054877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 447 - 587
Target Start/End: Complemental strand, 3064563 - 3064423
Alignment:
| Q |
447 |
ctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaacca |
546 |
Q |
| |
|
||||||||| |||| | ||| |||||||| |||||| || ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
3064563 |
ctttcctttgtcctctgctcactgattctgcaatccatctgtgttgtagctcaaaccaaaagtaccatagtcattggtgattcttttactgcacaaacca |
3064464 |
T |
|
| Q |
547 |
gcaactctacatggttactttcaccttctggtgactttgcc |
587 |
Q |
| |
|
| | |||| ||||||| |||||||||||||||||||||||| |
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|
| T |
3064463 |
gtacctctccatggttgctttcaccttctggtgactttgcc |
3064423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 3039444 - 3039544
Alignment:
| Q |
34 |
acatagaaagaccagtagagatcacttacgtgctttaattttgatagacacaaaaaatatctatttactaccaaaatcatatggaccaaattgattcaga |
133 |
Q |
| |
|
|||||||||||| ||||| | | |||| |||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
3039444 |
acatagaaagactagtagtggtgactttcgtgctttaaatttgatggacacaaaaaatatctatttactatcaaaattatatggaccaaattgattcaga |
3039543 |
T |
|
| Q |
134 |
a |
134 |
Q |
| |
|
| |
|
|
| T |
3039544 |
a |
3039544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 3047000 - 3047179
Alignment:
| Q |
23 |
agaacattcgaacatagaaagaccagtagagatcacttacgtgctttaattttgatagacacaaaaaatatctatttactaccaaaatcatatggaccaa |
122 |
Q |
| |
|
||||||||| ||||||||||||||||| | | ||||||||| |||||||||||| |||| || ||||||||||| |||| |||||| |||||||||| |
|
|
| T |
3047000 |
agaacattc-aacatagaaagaccagttgtagtgacttacgtgttttaattttgatggaca-aataaatatctatt-actatcaaaattatatggaccag |
3047096 |
T |
|
| Q |
123 |
attgattcagaa----------ggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgttgtg |
197 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3047097 |
attgattaagaatctagataaaggcttcctctctactttcctttctcctctaat--cactgattcttcaatttatctttgttgtg |
3047179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 492 - 584
Target Start/End: Complemental strand, 3066555 - 3066463
Alignment:
| Q |
492 |
gtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgacttt |
584 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||| ||||||| |||||||||||||||||||| |
|
|
| T |
3066555 |
gtagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttt |
3066463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 3053781 - 3053856
Alignment:
| Q |
57 |
acttacgtgctttaattttgatagacacaaaaaatatctatttactaccaaaatcatatggaccaaattgattcaga |
133 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
3053781 |
acttacgtgctttaaatttgatggacacaaaa-atatctatttactatcaaaattatatggaccaaattgattcaga |
3053856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 587
Target Start/End: Complemental strand, 3072237 - 3072118
Alignment:
| Q |
468 |
ctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttacttt |
567 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| ||||| ||||| |||||||| | || | | ||||||| || |||| ||||||| |||| |
|
|
| T |
3072237 |
ctgattcttcaatccatcagtgttgtagctcaaaccaaaagtaccatagcagctggtgattttcatatttcagaaaccaacacctctccatggttgcttt |
3072138 |
T |
|
| Q |
568 |
caccttctggtgactttgcc |
587 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3072137 |
caccttctggtgactttgcc |
3072118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 518 - 587
Target Start/End: Complemental strand, 3068516 - 3068447
Alignment:
| Q |
518 |
cattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
587 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
3068516 |
cattggtgattcttttactgcagataccggcaactctccatggttgctttcaccttctggtgactttgcc |
3068447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 3064658 - 3064591
Alignment:
| Q |
63 |
gtgctttaattttgatagacacaaaaaatatctatttactaccaaaatcatatggaccaaattgattc |
130 |
Q |
| |
|
|||||||||||||||| || |||| | |||| ||||||||| ||||||||||||| || |||||||| |
|
|
| T |
3064658 |
gtgctttaattttgattgaaacaagagatatttatttactataaaaatcatatggatcatattgattc |
3064591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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