View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2721_high_3 (Length: 414)
Name: NF2721_high_3
Description: NF2721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2721_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 43076521 - 43076917
Alignment:
| Q |
1 |
tctttctttctaagaataatacttcaaacatgaatttcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacacaatgtcatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076521 |
tctttctttctaagaataatacttcaaacatgaatttcattttctatgttttattacttcttcttgttctacaaaatcccattgtaacacaatgtcatac |
43076620 |
T |
|
| Q |
101 |
aaagggacttcgaccaaaaccttctactggatttggaatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076621 |
aaagggacttcgaccaaaaccttctactggatttggaatgtctgccaatatgaccaaagtccaagaatcagaacaacaattcatgaaatgggtgaaattt |
43076720 |
T |
|
| Q |
201 |
gttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaacgtttataaacattcaagtaaaggaggatttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076721 |
gttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaacgtttataaacattcaagtaaaggaggatttt |
43076820 |
T |
|
| Q |
301 |
catcaattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttcatgcaggggtttacacgtaagtacttgtgct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076821 |
catcaattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttcatgcaggggtttacacgtaagtacttgtgct |
43076917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 169 - 389
Target Start/End: Complemental strand, 33966889 - 33966669
Alignment:
| Q |
169 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
268 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | | | || ||||||||||| ||| |||||||||||||| | |
|
|
| T |
33966889 |
cagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
33966790 |
T |
|
| Q |
269 |
cgtttataaacattcaagtaaaggaggattttcat-caattcaagcagccattgattcccttcccttcattaatttagtgagagttgtcattaaggttca |
367 |
Q |
| |
|
|||| |||| || | | ||| |||||| || |||||||| ||||||||||| ||||| | ||| ||| | || ||||||||||| |||||||| |
|
|
| T |
33966789 |
cgttgataagaatccttcttttgga-gattttgatacaattcaaaatgccattgattctcttccttccatcaatcttgttagagttgtcatcaaggttca |
33966691 |
T |
|
| Q |
368 |
tgcaggggtttacacgtaagta |
389 |
Q |
| |
|
|||||| |||||||||| |||| |
|
|
| T |
33966690 |
tgcaggagtttacacgtgagta |
33966669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University