View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2721_high_5 (Length: 317)
Name: NF2721_high_5
Description: NF2721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2721_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 301
Target Start/End: Complemental strand, 41241445 - 41241148
Alignment:
| Q |
4 |
acaacagttcaaacccaatctagaaatgcgaaccaacaacctatcgaaactggaaccaacaggtggaaggagagagttaaacagtggtctgtggtggatg |
103 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||| | |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
41241445 |
acaacagtccaaacccaatcaagaaatgcgacccaccgacctattgaaactggaaccaaccagtggaaggagagggttaaacagtggtctgtggaggatg |
41241346 |
T |
|
| Q |
104 |
gatctcgtcgcaccaccacccttgagactacataatgcacttgtgttttggaaggcgtgatttcggatggtcggagttcatttgggttagagagagacga |
203 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
41241345 |
gatctcgtcgcaccaccacccttgaggctacataatgcacttgtgttttggaaggggggatttcggatgatcggaggtcatttgggttagagagacacga |
41241246 |
T |
|
| Q |
204 |
gttaactcaatccaaatgtggttaattgtattagattggtggttagtgaatttaacaaagcgtcataactcattaataatcaattgaacacaattaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41241245 |
gttaactcaatccaaatgtggttaattgtattaggttgctggttagtgaatttaacaaagcgtcataactcattaataatcaattgaacacaattaat |
41241148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 93 - 273
Target Start/End: Original strand, 41246415 - 41246596
Alignment:
| Q |
93 |
tgtggtggatggatctcgtcgcaccaccacccttgagactacataatg-cacttgtgttttggaaggcgtgatttcggatggtcggagttcatttgggtt |
191 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| | | | | | | ||||||||| |||||||||||||| || || ||| ||| |
|
|
| T |
41246415 |
tgtggaggatggatctcgtcgcaccaccacccttgagactacatcacgacgcctatcttttggaagtgagaatttcggatggtcgaaggtccttttagtt |
41246514 |
T |
|
| Q |
192 |
agagagagacgagttaactcaatccaa--atgtggttaattgtattagattggtggttagtgaatttaacaaagcgtcataact |
273 |
Q |
| |
|
||||||| | |||||| |||| || ||||||||| |||||||| |||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
41246515 |
agagagata--ggttaacacaatttaaatatgtggttagttgtattaagttggtggttaatgaatataacaaagtgtcataact |
41246596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 41246615 - 41246651
Alignment:
| Q |
265 |
gtcataactcattaataatcaattgaacacaattaat |
301 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
41246615 |
gtcataacccattaacaatcaattgaacacaattaat |
41246651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University