View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2721_low_6 (Length: 247)
Name: NF2721_low_6
Description: NF2721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2721_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 20103449 - 20103220
Alignment:
| Q |
1 |
ctctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaaaagtggtatcttgttctattt |
100 |
Q |
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|||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
20103449 |
ctctcttcgtagccattgttgccatgttcatttgtttcattggtggacactactttgtgctcacagataaatataccaagagtggtatcttgttctattt |
20103350 |
T |
|
| Q |
101 |
atatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatcttctcaaagttattttgaagaaggtgccaccgcca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20103349 |
atatattgccatttgcttgcctatcacattctatgcagttgagcattttccgttatatattgatcttctcaaagttattttgaagaaggtgccaccacca |
20103250 |
T |
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| Q |
201 |
agtatcaagggtgttaagttgtagaggtgt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20103249 |
agtatcaagggtgttaagttgtagaggtgt |
20103220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 20079132 - 20078903
Alignment:
| Q |
1 |
ctctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaaaagtggtatcttgttctattt |
100 |
Q |
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|
|||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
20079132 |
ctctcttcgtagccattgttgccatgttcatttctttcattgctggacactactttgtgctcacagataaatataccaagagtggtatcttgttctattt |
20079033 |
T |
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| Q |
101 |
atatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatcttctcaaagttattttgaagaaggtgccaccgcca |
200 |
Q |
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| T |
20079032 |
atatattgccatttgcttgcctatcacattctatggagttgtccagtttccattatatcttgatcttgtcaaagttacttggaggaaggtgccaccacca |
20078933 |
T |
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| Q |
201 |
agtatcaagggtgttaagttgtagaggtgt |
230 |
Q |
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|||||||||||||||||| |||| |||||| |
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| T |
20078932 |
agtatcaagggtgttaagctgtaaaggtgt |
20078903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 66 - 230
Target Start/End: Complemental strand, 20130604 - 20130440
Alignment:
| Q |
66 |
gataaatataccaaaagtggtatcttgttctatttatatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatc |
165 |
Q |
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||||||||||||| |||||||||| |||||||||||| || ||||||||||||| |||| |||||||| |||| ||||||| ||||||| |||||| |
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| T |
20130604 |
gataaatataccatgggtggtatcttattctatttatatgttctcatttgcttgcctgtcactctctatgcacttgttcagtttcggttatatgttgatc |
20130505 |
T |
|
| Q |
166 |
ttctcaaagttattttgaagaaggtgccaccgccaagtatcaagggtgttaagttgtagaggtgt |
230 |
Q |
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| T |
20130504 |
ttgttaaagttctttggaagaaggtgccaccaccaagtattaagggtgttaagttgtagaagtgt |
20130440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 19903934 - 19904099
Alignment:
| Q |
2 |
tctcttcatagccattgtcgccatgttcatttctttcattggtggacactactttgtgctcgtagataaatataccaaaagtggtatcttgttctattta |
101 |
Q |
| |
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|||||||||||||||| | |||||||| |||||||| ||| |||||| ||| || ||||| ||| |||||| ||| ||| ||| |||||| ||||| |
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| T |
19903934 |
tctcttcatagccatttttgccatgttattttctttctttgctggacaataccttttgctcacagacaaatatgacaagagtagtagcttgttatatttc |
19904033 |
T |
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| Q |
102 |
tatattgccatttgcttgcctatcacattctatgcagttgtgcagtttccgttatatattgatctt |
167 |
Q |
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| | ||||| || | | ||| ||| | ||||||| || |||||||||||||||||||||||||| |
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| T |
19904034 |
tctcttgccggttccctccctgtcatgtactatgcatttctgcagtttccgttatatattgatctt |
19904099 |
T |
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