View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2721_low_7 (Length: 238)
Name: NF2721_low_7
Description: NF2721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2721_low_7 |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38212794 - 38212578
Alignment:
| Q |
1 |
caacattccgtaaaccacaaataaaagaaaaaagacagtttctctcatttacccactaagaaaagtatgtgcaatagacaaggtatagtttaaagtagag |
100 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38212794 |
caacattctgtaaaccacaaataaaagaaaaa-gacagtttccctcatttacccactaagaaaagtatgtgcaatagacaaggtatagtttaaagtagag |
38212696 |
T |
|
| Q |
101 |
taaataccccaagttaacccttaaaattgaagggttcttacaatctagtatcccatattatcaatattttaaaatgatctttgaaattgcaaaactttaa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
38212695 |
taaataccccaagttaacccttaaaattgaatggttcttacaatctagtaccccatattatcaatatttcaaaatgatctttgaaattgcaaaactataa |
38212596 |
T |
|
| Q |
201 |
tcaagtcataaacaaaac |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
38212595 |
tcaagtcataaacaaaac |
38212578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 66821 - 66619
Alignment:
| Q |
1 |
caacattccgtaaaccacaaataaaagaaaaaagacagtttctctcatttacccactaagaaaagtatgtgcaatagacaaggtatagtttaaagtagag |
100 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||| | |||||||||| || ||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
66821 |
caacattctgtaaaccacagataaaagaaaaa-gacagttgccctcatttacc-accaagaaaagtatttgcaatagacaaggtatagtttaatgtagag |
66724 |
T |
|
| Q |
101 |
taaataccccaagttaacccttaaaattgaagggttcttacaatctagtatcccatattatcaatattttaaaatgatctttgaaattgcaaaactttaa |
200 |
Q |
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| T |
66723 |
taaattccg-aagttaacccttaaaattatagggttctaacaatctagtaccccatattatcaatatttcaaaatgatctttgagattg-aaaactttaa |
66626 |
T |
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| Q |
201 |
tcaagtc |
207 |
Q |
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||||||| |
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| T |
66625 |
tcaagtc |
66619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 131811 - 132013
Alignment:
| Q |
1 |
caacattccgtaaaccacaaataaaagaaaaaagacagtttctctcatttacccactaagaaaagtatgtgcaatagacaaggtatagtttaaagtagag |
100 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||| | |||||||||| || ||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
131811 |
caacattctgtaaaccacagataaaagaaaaa-gacagttgccctcatttacc-accaagaaaagtatttgcaatagacaaggtatagtttaatgtagag |
131908 |
T |
|
| Q |
101 |
taaataccccaagttaacccttaaaattgaagggttcttacaatctagtatcccatattatcaatattttaaaatgatctttgaaattgcaaaactttaa |
200 |
Q |
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||||| || |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||| |||||||||| |
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| T |
131909 |
taaattccg-aagttaacccttaaaattatagggttctaacaatctagtaccccatattatcaatatttcaaaatgatctttgagattg-aaaactttaa |
132006 |
T |
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| Q |
201 |
tcaagtc |
207 |
Q |
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||||||| |
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| T |
132007 |
tcaagtc |
132013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 12241383 - 12241430
Alignment:
| Q |
157 |
attatcaatattttaaaatgatctttgaaattgcaaaactttaatcaa |
204 |
Q |
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|||||| ||||||||||||||| |||||||||||||| ||||||||| |
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| T |
12241383 |
attatcgatattttaaaatgattcttgaaattgcaaaattttaatcaa |
12241430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 24143772 - 24143719
Alignment:
| Q |
141 |
caatctagtatcccatattatcaatattttaaaatgatctttgaaattgcaaaa |
194 |
Q |
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||||||||||| || ||| |||||||| |||| |||||||||||||||||||| |
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| T |
24143772 |
caatctagtatatcacattttcaatattataaattgatctttgaaattgcaaaa |
24143719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 41433670 - 41433704
Alignment:
| Q |
154 |
catattatcaatattttaaaatgatctttgaaatt |
188 |
Q |
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||||||||||||||||||||||||| ||||||||| |
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| T |
41433670 |
catattatcaatattttaaaatgatttttgaaatt |
41433704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 32332334 - 32332302
Alignment:
| Q |
162 |
caatattttaaaatgatctttgaaattgcaaaa |
194 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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| T |
32332334 |
caatattttaaaatgatctctgaaattgcaaaa |
32332302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 4156060 - 4156020
Alignment:
| Q |
164 |
atattttaaaatgatctttgaaattgcaaaactttaatcaa |
204 |
Q |
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||||| ||||||||||| ||||||||||||| ||||||||| |
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| T |
4156060 |
atattctaaaatgatctctgaaattgcaaaattttaatcaa |
4156020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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