View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_high_11 (Length: 469)
Name: NF2722_high_11
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 20 - 459
Target Start/End: Original strand, 31959516 - 31959955
Alignment:
| Q |
20 |
cactgcaataaattatcacacaatatcgatctaggaaacgtaaagcatcaaaatcaaagtgcagaatcatgagtcaagaacagccacagagaccacaagc |
119 |
Q |
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| T |
31959516 |
cactgcaataaattatcacacaatatcgatctaggaaacgtaaagcatcaaaatcaaagtgcagaatcatgagtcaagaacagccacagagaccacaagc |
31959615 |
T |
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| Q |
120 |
agaacaattctccgagcaagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagcctcacaaccaatcaaaccaagagacgcagctctc |
219 |
Q |
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| T |
31959616 |
agagcaattctccgagcaagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagcctcacaaccaatcaaaccaagagacgcagctctc |
31959715 |
T |
|
| Q |
220 |
atgcaagccacagagaatcaagccctaggacaaacccaaaagggcagtccagcctccgtgatgcaatcagcagctgcagtaaacaccgctgccggcctcg |
319 |
Q |
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| T |
31959716 |
atgcaagccacagagaatcaagccctaggacaaacccaaaagggcagtccagcctccgtgatgcaatcagcagctgcagtaaacaccgctgccggcctcg |
31959815 |
T |
|
| Q |
320 |
taagccacgaagacatctcagacatagcaaaaaaccaaggcatgagtgtctccaaaaccaaagtgggtgcaaaccgtgtgatcacagaatctgttggatc |
419 |
Q |
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| T |
31959816 |
taagccacggagacatctcagacatagcaaaaaaccaaggcatgagtgtctccaaaaccaaagtgggtgcaaaccgtgtgatcacagaatctgttggatc |
31959915 |
T |
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| Q |
420 |
acaagttgttggacagtttgttgaacctgatgtgcctatg |
459 |
Q |
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| T |
31959916 |
acaagttgttggacagtttgttgaacctgatgtgcctatg |
31959955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 11248075 - 11248026
Alignment:
| Q |
136 |
caagaacccatcaaatatggtgacgttttcaacgtctctggtgaattagc |
185 |
Q |
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| T |
11248075 |
caagaacccatcaaatacggtgaagttttcaatgtctccggtgacttagc |
11248026 |
T |
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