View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_high_18 (Length: 385)
Name: NF2722_high_18
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 6261871 - 6261489
Alignment:
| Q |
1 |
aaattgagggacaactcattctgaggaacaacaatgaatcattgagaaaccgatttgggccggttagcatgccttatacccttctttttccttcaagtga |
100 |
Q |
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| T |
6261871 |
aaattgagggacaactcattctgaggaacaacaatgaatcattgagaaaccgagttgggccggttagcatgccttatacccttcttttaccttcaagtga |
6261772 |
T |
|
| Q |
101 |
ggaaggacttacttttagaggaattcccaacagtatctcaatctaagagtattgcttgattgtgaataattgtggttagggttttaaataatttgtgtga |
200 |
Q |
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| T |
6261771 |
ggaaggacttacttttagaggaattcccaacagtatctccatctaagagtattgctttattgtgaataattgtggttagggttttaaataatttgtgtga |
6261672 |
T |
|
| Q |
201 |
aagagggaatttcaattccttatcacatcacttatgtataattatgatgtgtgtttgattgcttgcttgttaatatgacaataatgtaagtacttatgct |
300 |
Q |
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| T |
6261671 |
aagagggaatttcaattccttatcacatcacttatgtataattatgatgtgtgtttgattgcttgcttgttaatatgacaataatgtaagtacttatgct |
6261572 |
T |
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| Q |
301 |
tttatatatgcagtgttgtatttatggtttgtaaggtggtggcccaaaac----atcttgtaaaatagtttatttcatctcac |
379 |
Q |
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| T |
6261571 |
tttatatatgcagtgttgtatttatggtttgtaaggtggtggcctaaaacatctatcttgtaaaatagtttatttcatgtcac |
6261489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 6455789 - 6455742
Alignment:
| Q |
92 |
ttcaagtgaggaaggacttacttttagaggaattcccaacagtatctc |
139 |
Q |
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| T |
6455789 |
ttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctc |
6455742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 6361778 - 6361701
Alignment:
| Q |
69 |
atgccttatacccttctttttccttcaagtgaggaaggacttacttttagaggaattcccaacagtatctcaatctaa |
146 |
Q |
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|||||||| || || |||| |||||| |||||||||||| | |||| ||||| |||||||||||| |||| |||||| |
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| T |
6361778 |
atgccttacactctgctttatccttctagtgaggaaggattgacttgcagaggcattcccaacagtgtctctatctaa |
6361701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 144
Target Start/End: Complemental strand, 42691824 - 42691749
Alignment:
| Q |
69 |
atgccttatacccttctttttccttcaagtgaggaaggacttacttttagaggaattcccaacagtatctcaatct |
144 |
Q |
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| T |
42691824 |
atgccttatactttgcttcatccttctagtgaggaaggactaacttttagaggaattcctaatagtatctctatct |
42691749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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