View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2722_high_23 (Length: 345)
Name: NF2722_high_23
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 25880724 - 25880491
Alignment:
| Q |
1 |
agtgcattagacgattttagttcaacaaatttacaattaaattattgatttattgttctagaaagatgtaaatcctgctctacaaagttcaaacttggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25880724 |
agtgcattagacgattttagttcaacaaatttacaattaaattattgattgattgttctagaaagatgtaaatcctgctctacaaagttcaaacttggca |
25880625 |
T |
|
| Q |
101 |
gcacccaaattcaaacttttaaaatttataatttgacattgaaaataaggtgggctattgacttaattccgatgaccagcatttcaagtttattctgatg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25880624 |
gcacccaaattcaaatttttaaaatttataatttgacattgaaaataaggagggctattgacttaattccgatgaccagcatttcaagtttattctgacg |
25880525 |
T |
|
| Q |
201 |
tctttaaaaaacaattataaaggacggtgtttgaa |
235 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
25880524 |
tctttaaaaaa-aattataaaggacggtgtttgaa |
25880491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University