View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_high_25 (Length: 335)
Name: NF2722_high_25
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 44504882 - 44504642
Alignment:
| Q |
18 |
aattttagagctggtttctatgtggctcaagaaactatgattttctaaatattcatgggctaacatgagtgagaaggaagagattattgatttgataaac |
117 |
Q |
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| T |
44504882 |
aattttagagctggtttttatgtggctcaacaaactatgattttctaaatattcatgggctaacatgagtgagaaggaagagattattgatttggtaaac |
44504783 |
T |
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| Q |
118 |
acagatcaaccattttagttggtggtttcaagaaaaaagaagaacaaattgaagcagtggattgtgactcgcataagatttaaggtaggttattccattc |
217 |
Q |
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| T |
44504782 |
acaaatcaaccattttagttggtggtttcaaggaaaaagaaaaacaaattgaagcagtggattgtgactcgcataagatttaagataggttattcta--- |
44504686 |
T |
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| Q |
218 |
caatagctcgtctcactaataatttggtggaaaattgttgctctca |
263 |
Q |
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| T |
44504685 |
--atagctcgtctcactaataatttggtggaaaattgttgctctca |
44504642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 15324707 - 15324802
Alignment:
| Q |
73 |
tgggctaacatgagtgagaaggaagagattattgatttgataa---acacagatcaaccattttagttggtggtttcaagaaaa-aagaagaacaa |
164 |
Q |
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| T |
15324707 |
tgggctaacatgtgtcagacagaagatattgttgatttgataagaaacacaaatcaaccattttaatcggtggtttcaaaaaaagaagaagaacaa |
15324802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 8231472 - 8231504
Alignment:
| Q |
129 |
attttagttggtggtttcaagaaaaaagaagaa |
161 |
Q |
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| T |
8231472 |
attttagttggtggttccaagaaaaaagaagaa |
8231504 |
T |
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