View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_high_28 (Length: 307)

Name: NF2722_high_28
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_high_28
NF2722_high_28
[»] chr5 (9 HSPs)
chr5 (9-295)||(1053487-1053773)
chr5 (11-295)||(1065844-1066128)
chr5 (8-294)||(1046813-1047102)
chr5 (11-295)||(1071571-1071855)
chr5 (11-294)||(1640430-1640713)
chr5 (9-191)||(1044333-1044515)
chr5 (23-295)||(1033842-1034114)
chr5 (11-295)||(1058752-1059036)
chr5 (230-295)||(1044229-1044294)
[»] scaffold0001 (1 HSPs)
scaffold0001 (37-120)||(65854-65937)
[»] chr3 (1 HSPs)
chr3 (37-106)||(12121338-12121407)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 1053773 - 1053487
Alignment:
Q  9 tattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1053773 tattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttc 1053674  T
Q  109 agctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1053673 agctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattca 1053574  T
Q  209 gttttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1053573 gttttctcatcaagaatttccattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagt 1053487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1066128 - 1065844
Alignment:
Q  11 ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag 110  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||  ||| ||| |||||||| |||||||    
T  1066128 ttatatttgttcagaggagcatcaagtgcaaatctctttggtaaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcag 1066029  T
Q  111 ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt 210  Q
    |||| |||||||| ||||| ||||  || || ||||| | |||||| ||||| || |||||  ||||||| |||| ||| | ||| |   | ||||||||    
T  1066028 ctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagt 1065929  T
Q  211 tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt 295  Q
    ||| ||| ||| | ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  1065928 tttttcaccaacagttttcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagt 1065844  T

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Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 1047102 - 1046813
Alignment:
Q  8 atattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctatttt 107  Q
    |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||| |||||  | ||||||| ||||||| |||||||||    
T  1047102 atattatacttgtttaggggagcattaagtgcaaatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctatttt 1047003  T
Q  108 cagctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattc 207  Q
    |||||||||||||||| || ||| |||||||||||| ||| |||||||| ||||| ||||||||| ||||||| | || ||||||| | | | ||||||     
T  1047002 cagctatagcattgatcccgtctagtctttcatagcttccggtaaccatgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattt 1046903  T
Q  208 agttttctcatcaagaatttc---cattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaag 294  Q
     ||||| ||||||| | ||||     || ||  ||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |||||    
T  1046902 tgttttatcatcaatagtttcattacttattcattctaccatatgacaatacagaataccatatttattgagggcattaaccatgtaaag 1046813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1071855 - 1071571
Alignment:
Q  11 ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag 110  Q
    ||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| || |||||||||||||||  |||  || |||||||| |||||||    
T  1071855 ttatacttgtttagaggagcatcaagtgcaaatctctttggcaaatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcag 1071756  T
Q  111 ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt 210  Q
    |||| |||||||| ||||| ||||  || || ||||| | |||||| ||||| || |||||  ||||||| |||| ||| | ||| |   | ||||||||    
T  1071755 ctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagt 1071656  T
Q  211 tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt 295  Q
    ||| ||| ||| | ||  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  1071655 tttttcaccaacagttatcattcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagt 1071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 1640430 - 1640713
Alignment:
Q  11 ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag 110  Q
    ||||||||||| ||||||||||  || || ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| | ||||||||     
T  1640430 ttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaa 1640529  T
Q  111 ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt 210  Q
    |||| ||||  || ||||||||||    ||||||||| | ||| |||||||||||||||||  | ||||| |||| ||||||||| | | ||||||||      
T  1640530 ctatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggcttttctcattggcaccaagctgtgaagacattcaac 1640629  T
Q  211 tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaag 294  Q
    ||| |||  || | ||| |||||||||||||||||| ||||| |||||||||   |||||| |||||||||| |||||||||||    
T  1640630 tttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaag 1640713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 1044515 - 1044333
Alignment:
Q  9 tattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttc 108  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | || |||||||||||||||| | | |||||||||| | |||||    
T  1044515 tattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaactacaagatctgccttgttttc 1044416  T
Q  109 agctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacacca 191  Q
    ||||||||||| ||| || |||||||| ||||||||||| | | |||| ||||  ||||||||| ||||||| |||| |||||    
T  1044415 agctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttctcattggcacca 1044333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 1034114 - 1033842
Alignment:
Q  23 agaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattga 122  Q
    |||||||| || |||||||||||||| || ||||||||||| | || |||||||||||||||| ||| ||||||||||||||| || |||||||||||||    
T  1034114 agaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattga 1034015  T
Q  123 ttccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaag 222  Q
    | ||||||||||| ||||| ||||| | |||||| ||||| ||||||||| ||||||| || | |||||  || ||| | | |||| |  | ||||||      
T  1034014 tcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatt 1033915  T
Q  223 aatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt 295  Q
       ||  ||||||||||||||||| ||||| |||||||||   || |||||||||||||| ||||||||||||    
T  1033914 tgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagt 1033842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1059036 - 1058752
Alignment:
Q  11 ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag 110  Q
    ||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || |||||||||||||||  ||| ||| |||| |||||||||||    
T  1059036 ttatacttgtttagaggagcattaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcag 1058937  T
Q  111 ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt 210  Q
    |||| |||||||| ||||| | ||  || || ||||| | | |||  ||||| || |||||  ||||||| || | ||| | ||| | |   |||||| |    
T  1058936 ctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaat 1058837  T
Q  211 tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt 295  Q
    | | |||| || | ||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||  |||||||||||    
T  1058836 tctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagt 1058752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 1044294 - 1044229
Alignment:
Q  230 attcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt 295  Q
    ||||||||||||||||| ||||| |||||||||   || |||||||||||||| ||||||| ||||    
T  1044294 attcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagt 1044229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
Q  37 tgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcatt 120  Q
    ||||||||||||||| |||| |||||||| || |||| ||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  65937 tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt 65854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 12121338 - 12121407
Alignment:
Q  37 tgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattt 106  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||||| ||| |||||||||| |||||    
T  12121338 tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttattt 12121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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