View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_high_31 (Length: 300)
Name: NF2722_high_31
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 49119086 - 49119333
Alignment:
| Q |
11 |
ttattctagttgcacttctggagggtcaaacttgattcaattgtgggttgccgatatccaatggatatttttgaaagttaggtaatttaactgttattgg |
110 |
Q |
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| T |
49119086 |
ttattctagttgcacttctggagggtcaaacttgattcaattgtgggttgccgatatccaatggatatttttaaaagctaggtaatttaactgttattgg |
49119185 |
T |
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| Q |
111 |
acttgcaatttgttaatcttttgttgagatttctttctctcctataagatttcttactctccttagctaaaaggaaatgatatgggtttataggcatatg |
210 |
Q |
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| T |
49119186 |
acttgcaatttgttaatcttttgttgagatttc--tctctcctataagatttcttactctccttagctaaaaggaaatgatatgggtttataggcatatc |
49119283 |
T |
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| Q |
211 |
ggggtctaggatgaggttcttggcgtgttttgttaccacggtgtattact |
260 |
Q |
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| T |
49119284 |
tgggtctaggatgaggttcttggcgtgttttgttaccacggtgtattact |
49119333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 49119410 - 49119454
Alignment:
| Q |
256 |
ttactatttgctctgtagtagaaatgttgcattgttcagaaaata |
300 |
Q |
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|||| ||||||||||| |||||||||||| ||||||||| ||||| |
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| T |
49119410 |
ttaccatttgctctgtcgtagaaatgttgtattgttcagcaaata |
49119454 |
T |
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