View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2722_high_37 (Length: 270)
Name: NF2722_high_37
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_37 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0003 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 12532070 - 12531828
Alignment:
| Q |
16 |
atttcaattctattgatattggtgtaacattgtttctaatgatggacaatggatctttaaaaataggattatgttcactttaactcttactcaaatgttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
12532070 |
atttcaattctattgatattggtgtaacattgtttctaatgatggacgatggatctttaaaaataggattatgttcacttcaactcttgctcaaatgttt |
12531971 |
T |
|
| Q |
116 |
ggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnnnn |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12531970 |
gggaaatgatttattttatattaaattaaatgtattaataacaagattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccaaaaaa |
12531871 |
T |
|
| Q |
216 |
ntagaatgagaaagattaatcgttaaaaaacaatagcggttca |
258 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12531870 |
atagaacgagaaagattaatcgttaaaaaacaatagcgcttca |
12531828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 52134459 - 52134585
Alignment:
| Q |
118 |
aaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnnnnnt |
217 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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|
| T |
52134459 |
aaaaagatttattttatattaaat-aaatgtattaataacaagattcataaattgacaaaaaagtaattgtttacctcttataaattgaaccaaaaaaat |
52134557 |
T |
|
| Q |
218 |
agaatgagaaagattaatcgttaaaaaa |
245 |
Q |
| |
|
|||||||| ||||||| ||||||||||| |
|
|
| T |
52134558 |
agaatgaggaagattattcgttaaaaaa |
52134585 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 10355388 - 10355295
Alignment:
| Q |
113 |
tttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaataga |
206 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||| ||| || ||||||||||| |||||||||| || || |||||||||||||| |
|
|
| T |
10355388 |
tttggaaaaagatttattttgtattaaattaaatgtattaatgacaagactcataaattgaacaaaaagtaatcgtatatctcttataaataga |
10355295 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 31683 - 31925
Alignment:
| Q |
16 |
atttcaattctattgatattggtgtaacattgtttctaatgatggacaatggatctttaaaaataggattatgttcactttaactcttactcaaatgttt |
115 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
31683 |
atttcaattctattcatactggtgtaacattgtttctaatgatggacaatggatctttaaaaatagtattatgttcacttcaacacttactcaaatgttt |
31782 |
T |
|
| Q |
116 |
ggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnnnn |
215 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
31783 |
gggaaatgatttattttatattaaattaaatgtattaataacaaaatttataaattgacaaaaaagtaattgtttacttcttataaataaaaccaaaaaa |
31882 |
T |
|
| Q |
216 |
ntagaatgagaaagattaatcgttaaaaaacaatagcggttca |
258 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
31883 |
atagaacaagaaagattaatcattaaaaaacaatagcgcttca |
31925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 6841237 - 6841368
Alignment:
| Q |
113 |
tttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnn |
212 |
Q |
| |
|
||||| ||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6841237 |
tttgggaaaagatttattttttattaaat-aaatgtattaataacaagattcataaattgacaaaaaagtaattgtttacctcttataaattgaaccaaa |
6841335 |
T |
|
| Q |
213 |
nnnntagaatgagaaagattaatcgttaaaaaa |
245 |
Q |
| |
|
||||| ||||||||||| ||||||||||| |
|
|
| T |
6841336 |
aaaatagaacgagaaagattattcgttaaaaaa |
6841368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 11647061 - 11646975
Alignment:
| Q |
123 |
gatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc |
209 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
11647061 |
gatttattttgtattaaattaaatgcattaataacaagattcataaattgaaaaaaaagaaattgtttaccgcttataaatagaacc |
11646975 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 13764650 - 13764760
Alignment:
| Q |
141 |
ttaaatgtattaataacacgattcataaattgacaaaa-aagtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt |
239 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | || || ||||||||||||||||| |
|
|
| T |
13764650 |
ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaaatataacgagaaagattaatcgtt |
13764748 |
T |
|
| Q |
240 |
aaaaaacaatag |
251 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13764749 |
aaaaaacaatag |
13764760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 39704430 - 39704377
Alignment:
| Q |
124 |
atttattttatattaaattaaatgtattaataacacgattcataaattgacaaa |
177 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
39704430 |
atttattttgtattaagttaaatgtattggtaacaagattcataaattgacaaa |
39704377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 6581 - 6450
Alignment:
| Q |
114 |
ttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnn |
213 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
6581 |
ttgggaaaagatttattttgtattaaattaaatgtattaataacaagattcataaattgataaaagagtaattgtttacctcttataaattgaaccaaaa |
6482 |
T |
|
| Q |
214 |
nnntagaatgagaaagattaatcgttaaaaaa |
245 |
Q |
| |
|
||||||||||||||||| | ||||||||| |
|
|
| T |
6481 |
aaatagaatgagaaagattatttgttaaaaaa |
6450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 4659284 - 4659153
Alignment:
| Q |
114 |
ttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnn |
213 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
4659284 |
ttgggaaaagatttattttgtattaaattaaatgtattaataacaagattcataaattgataaaagagtaattgtttacctcttataaattgaaccaaaa |
4659185 |
T |
|
| Q |
214 |
nnntagaatgagaaagattaatcgttaaaaaa |
245 |
Q |
| |
|
||||||||||||||||| | ||||||||| |
|
|
| T |
4659184 |
aaatagaatgagaaagattatttgttaaaaaa |
4659153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 27446927 - 27447044
Alignment:
| Q |
141 |
ttaaatgtattaataacacgattcataaattgacaaaa-aagtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt |
239 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | | || |||||||||||||||| |
|
|
| T |
27446927 |
ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaattgtaacaagaaagattaatcgtt |
27447025 |
T |
|
| Q |
240 |
aaaaaacaatagcggttca |
258 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
27447026 |
aaaaaacaatagcgcttca |
27447044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 924871 - 925007
Alignment:
| Q |
113 |
tttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgac-aaaaaagtaattgtttacctcttataaatagaaccnn |
211 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
924871 |
tttgaaaaaagatttattttgtattaaattaaatgtattaataacaagattcataaattgacaaaaaaaataattgtttacctcttataaatagaactaa |
924970 |
T |
|
| Q |
212 |
nnnnntagaatgagaaagattaatcgttaaaaaacaa |
248 |
Q |
| |
|
||||| |||||| |||||||||||| |||||| |
|
|
| T |
924971 |
aaaagtagaacgagaaatattaatcgttaagaaacaa |
925007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 2040515 - 2040429
Alignment:
| Q |
123 |
gatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc |
209 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
2040515 |
gatttattttgtattaaattaaatgcattaataacaagattcataaattgacaaaaaagaaattgtttaccgcttataaatagaacc |
2040429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 22772183 - 22772072
Alignment:
| Q |
147 |
gtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc-nnnnnnntagaatgagaaagattaatcgttaaaaaa |
245 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
22772183 |
gtattaataacaagattcgtaaattgacaaaaa-gtaattgtttacctcttataaatagaaccaaaaaaaatagaacgagaaagattaatcgttaaaaaa |
22772085 |
T |
|
| Q |
246 |
caatagcggttca |
258 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
22772084 |
caatagcgcttca |
22772072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 33803 - 33686
Alignment:
| Q |
141 |
ttaaatgtattaataacacgattcataaattgacaaaaaa-gtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt |
239 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | || || ||||||||||||||||| |
|
|
| T |
33803 |
ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaaatataacgagaaagattaatcgtt |
33705 |
T |
|
| Q |
240 |
aaaaaacaatagcggttca |
258 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
33704 |
aaaaaacaatagcgcttca |
33686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 40431 - 40314
Alignment:
| Q |
141 |
ttaaatgtattaataacacgattcataaattgacaaaaaa-gtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt |
239 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | | || |||||||||||||||| |
|
|
| T |
40431 |
ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaattgtaacaagaaagattaatcgtt |
40333 |
T |
|
| Q |
240 |
aaaaaacaatagcggttca |
258 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
40332 |
aaaaaacaatagcgcttca |
40314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 23598071 - 23597999
Alignment:
| Q |
137 |
taaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc |
209 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
23598071 |
taaattaaacgtattaataacaagattcataaattgacaaaaaagtaattatttacctcttataaataaaacc |
23597999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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