View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_high_4 (Length: 748)

Name: NF2722_high_4
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_high_4
NF2722_high_4
[»] chr2 (1 HSPs)
chr2 (10-729)||(18523599-18524319)


Alignment Details
Target: chr2 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 10 - 729
Target Start/End: Original strand, 18523599 - 18524319
Alignment:
Q  10 acatcatcagaataaactccaaccaaaactgtatcatcataggaaagcttgagctttaagattagttacttcaagagcagcacctaacatggacaagtgc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18523599 acatcatcagaataaactccaaccaaaactgtatcatcataggaaagcttgagctttaagattagttacttcaagagcagcacctaacatggacaagtgc 18523698  T
Q  110 aaaactctggcatgtgtgattgaacttgtttacatttttaaatttaataatgaaagattgagatgagaacaacattatatcaaaatcacctaaaaataac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18523699 aaaactctggcatgtgtgattgaacttgtttacatttttaaatttaataatgaaagattgagatgagaacaacattatatcaaaatcacctaaaaataac 18523798  T
Q  210 aaaaagcaaactgattggtatcagtgttctgttttaaatctggatgacctgtcaactccataatggcccaaaacaatctaatgactaatcaatccccaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18523799 aaaaagcaaactgattggtatcagtgttctgttttaaatctggatgacctgtcaactccataatggcccaaaaaaatctaatgactaatcaatccccaat 18523898  T
Q  310 agattaccgcacatcatattcctcactcttgcacatcgttattaatatcatattcatcgcatcctaagaaattacatcaagaaaaattcaaatggatagt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18523899 agattaccgcacatcatattcctcactcttgcacatcgttattaatatcatattcatcgcatcctaagaaattacatcaagaaaaattcaaatggatagt 18523998  T
Q  410 agcataatgaataaaaatacctgaaatcatgaccccaggaagagatgcaatgtgcctgaaaattatgaataagttaaattatcaaagat-gtcataaaat 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18523999 agcataatgaataaaaatacctgaaatcatgaccccaggaagagatgcaatgtgcctgaaaattatgaataagttaaattatcaaagatggtcataaaat 18524098  T
Q  509 tccaaaagaaatttgaaatagtctttccggctagacctcgtcaatggcaatgagacttagcaaccccctggaatgaatctttgtcagctttgacataaac 608  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18524099 tccaaaacaaatttgaaatagtctttccggctagacctcatcaatggcaatgagacttagcaaccccctggaatgaatctttgtcagctttgacataaac 18524198  T
Q  609 cctggggttgctatcaactctggagtaacatatagcagccttgtagacggttttccagaaccaaggtcctcgtgaatcttaaacataaaacagaaaaatc 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18524199 cctggggttgctatcaactctggagtaacatatagcagccttgtagacggttttccagaaccaaggtcctcgtgaatcttaaacataaaacagaaaactc 18524298  T
Q  709 agtttcctaaattaataacac 729  Q
    |||||||||||||||||||||    
T  18524299 agtttcctaaattaataacac 18524319  T

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