View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_high_42 (Length: 243)
Name: NF2722_high_42
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2891660 - 2891459
Alignment:
| Q |
19 |
cacagaagatgagagagaaagctatgaaagttgtaataggttgaattttgaaatccctgcacatattttagaagcgaatgattttatgtaatgtgtgcaa |
118 |
Q |
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| T |
2891660 |
cacagaagatgagagagaaagctatgaaagttgtaataggttgaattttgaaatccctgcacatattttagaagcgaatgattttatgtaatgtgtgcaa |
2891561 |
T |
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| Q |
119 |
ttggatccataatcatcaacagttaaatcaaccaaacagttgattatttcaccctctgtttttgctgggatatatagctactgtatatctatggatcctt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2891560 |
ttggatccataatcatcaacagttaaatcaaccaaacagttgattatttcaccctctgtttttgctgggatatatagctactgtctatctatggatcctt |
2891461 |
T |
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| Q |
219 |
tg |
220 |
Q |
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|| |
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| T |
2891460 |
tg |
2891459 |
T |
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