View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_high_47 (Length: 213)
Name: NF2722_high_47
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_high_47 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 88571 - 88393
Alignment:
| Q |
22 |
taccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtc |
121 |
Q |
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| T |
88571 |
taccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtc |
88472 |
T |
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| Q |
122 |
tccacatagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatga |
200 |
Q |
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| T |
88471 |
tccacatagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatga |
88393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 28 - 200
Target Start/End: Complemental strand, 96573 - 96401
Alignment:
| Q |
28 |
tattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtctccaca |
127 |
Q |
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| T |
96573 |
tattattctccaatcattcatcaataaaacaagttctcgtgcaaattaagtccagagggagtatgtaatacacgtgtctatacctggagaagtctccaca |
96474 |
T |
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| Q |
128 |
tagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatga |
200 |
Q |
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| T |
96473 |
gagaatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttgatga |
96401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 40877712 - 40877890
Alignment:
| Q |
22 |
taccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtc |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877712 |
taccgctattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtc |
40877811 |
T |
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| Q |
122 |
tccacatagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatga |
200 |
Q |
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| T |
40877812 |
tccacatagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatga |
40877890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 40869709 - 40869881
Alignment:
| Q |
28 |
tattattctcaaaacattcatcaataaaacaagctctcatgtaaattagttctagagggagtatataataaacatgtctatacctcgagaagtctccaca |
127 |
Q |
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|||||||||| || ||||||||||||||||||| |||| || |||||| || ||||||||||| ||||| || ||||||||||| |||||||||||||| |
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| T |
40869709 |
tattattctccaatcattcatcaataaaacaagttctcgtgcaaattaagtccagagggagtatgtaatacacgtgtctatacctggagaagtctccaca |
40869808 |
T |
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| Q |
128 |
tagaatcagaccatgacggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatga |
200 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40869809 |
gagaatcaggccatgacggatcagcagcctgcacagaagcaacagttccgataaaccaacttatccttgatga |
40869881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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