View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_high_49 (Length: 207)

Name: NF2722_high_49
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_high_49
NF2722_high_49
[»] chr2 (12 HSPs)
chr2 (1-191)||(41533460-41533650)
chr2 (1-132)||(38119886-38120017)
chr2 (1-118)||(38855182-38855299)
chr2 (6-129)||(42471886-42472009)
chr2 (4-113)||(40355593-40355702)
chr2 (5-132)||(12068984-12069110)
chr2 (4-67)||(34640472-34640535)
chr2 (1-62)||(5306046-5306107)
chr2 (1-129)||(38064511-38064630)
chr2 (44-123)||(30489682-30489761)
chr2 (9-67)||(39133603-39133661)
chr2 (8-61)||(17913875-17913928)
[»] chr8 (8 HSPs)
chr8 (1-132)||(16576540-16576670)
chr8 (1-129)||(6636141-6636260)
chr8 (1-61)||(29909356-29909416)
chr8 (6-129)||(6628343-6628456)
chr8 (1-130)||(8109656-8109785)
chr8 (5-61)||(29443030-29443086)
chr8 (96-132)||(3294695-3294731)
chr8 (9-53)||(38600465-38600509)
[»] chr6 (10 HSPs)
chr6 (1-132)||(697789-697920)
chr6 (5-124)||(30591397-30591516)
chr6 (1-120)||(16166288-16166399)
chr6 (1-129)||(22292847-22292975)
chr6 (1-129)||(15055841-15055968)
chr6 (6-61)||(6138649-6138704)
chr6 (1-126)||(22298405-22298530)
chr6 (10-67)||(6103477-6103534)
chr6 (9-61)||(3026984-3027035)
chr6 (9-61)||(4111083-4111134)
[»] chr4 (20 HSPs)
chr4 (4-129)||(1458677-1458802)
chr4 (5-132)||(53994701-53994829)
chr4 (6-128)||(13610913-13611035)
chr4 (1-132)||(43137171-43137301)
chr4 (1-132)||(47681708-47681831)
chr4 (5-129)||(7291283-7291406)
chr4 (4-68)||(15521726-15521790)
chr4 (5-68)||(23602388-23602451)
chr4 (1-132)||(47304627-47304757)
chr4 (6-129)||(31763326-31763439)
chr4 (1-47)||(19901550-19901596)
chr4 (6-129)||(38069078-38069193)
chr4 (8-62)||(51084644-51084698)
chr4 (8-67)||(20452613-20452672)
chr4 (6-49)||(50689878-50689921)
chr4 (8-66)||(1180159-1180217)
chr4 (96-138)||(19901638-19901680)
chr4 (4-61)||(34458633-34458690)
chr4 (9-65)||(20471959-20472015)
chr4 (9-61)||(37010706-37010757)
[»] chr7 (15 HSPs)
chr7 (1-132)||(9459137-9459268)
chr7 (6-128)||(9626211-9626333)
chr7 (6-126)||(3525533-3525653)
chr7 (4-63)||(4919738-4919797)
chr7 (1-61)||(3406193-3406253)
chr7 (5-113)||(5738632-5738740)
chr7 (8-129)||(21524160-21524279)
chr7 (26-131)||(12218331-12218436)
chr7 (25-92)||(9823529-9823596)
chr7 (25-92)||(10725454-10725521)
chr7 (10-65)||(43341614-43341669)
chr7 (8-62)||(26425749-26425803)
chr7 (9-61)||(2732664-2732715)
chr7 (8-36)||(27157155-27157183)
chr7 (10-62)||(33447141-33447193)
[»] chr3 (8 HSPs)
chr3 (5-132)||(44028163-44028290)
chr3 (1-125)||(9798462-9798584)
chr3 (8-66)||(6130664-6130722)
chr3 (9-67)||(54650811-54650869)
chr3 (3-87)||(4957661-4957745)
chr3 (18-62)||(8700619-8700663)
chr3 (18-62)||(9052506-9052550)
chr3 (1-29)||(53200036-53200064)
[»] chr5 (7 HSPs)
chr5 (1-67)||(16719733-16719799)
chr5 (8-121)||(40897087-40897200)
chr5 (1-129)||(34583071-34583190)
chr5 (5-132)||(12621759-12621887)
chr5 (1-34)||(10542335-10542368)
chr5 (8-90)||(5927137-5927219)
chr5 (9-67)||(24427230-24427288)
[»] chr1 (16 HSPs)
chr1 (12-129)||(35362397-35362514)
chr1 (1-92)||(3289544-3289635)
chr1 (1-61)||(38669596-38669656)
chr1 (6-61)||(28093649-28093704)
chr1 (1-56)||(51127087-51127142)
chr1 (1-35)||(8772544-8772578)
chr1 (1-126)||(13642747-13642872)
chr1 (1-129)||(9857208-9857335)
chr1 (1-61)||(40707808-40707868)
chr1 (9-52)||(6889205-6889248)
chr1 (8-83)||(13142837-13142912)
chr1 (147-188)||(9857119-9857160)
chr1 (9-61)||(31225280-31225331)
chr1 (9-53)||(31955274-31955318)
chr1 (9-53)||(34049641-34049685)
chr1 (9-61)||(39860161-39860212)
[»] scaffold0004 (1 HSPs)
scaffold0004 (8-62)||(35200-35254)
[»] scaffold0951 (1 HSPs)
scaffold0951 (9-65)||(3115-3171)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 41533460 - 41533650
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||  ||||||||||||||||||||||| |||||    
T  41533460 aagcttgagctttttaaaaagcttattaatttaaataggttatgcttaggcttataaaaaaacctatcgagcctatcaagccgacccgtatagcagtata 41533559  T
Q  101 ttacatttttccacatttattatttatatttagtaatatnnnnnnnttattgatccttcaaattctcatagcacagttattcttattccag 191  Q
    |||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||| |||||||||||||||    
T  41533560 ttacatttttccacatttattatttatatttagtaatatcaaaaaatcattgatccttcaaattctcatagcacaattattcttattccag 41533650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38120017 - 38119886
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||   ||||   |||||||   || ||||||||   |||||    
T  38120017 aagcttgagctttttaaaaagcctattaatttaattatgtagggcttaggcttataaaaaaacttatcaagcctatcagatcggcccgtatatgagtata 38119918  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
    ||||||||||||| ||||||||||||||||||    
T  38119917 ttacatttttccatatttattatttatattta 38119886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 38855182 - 38855299
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| |||||    |||||| | || |||||| |   |||||    
T  38855182 aagcttgagctttttaaaaagcctattaatttaattaggctaggcttaggctcataaaaaagcctatcaagtctatcaggtcggcccgtacataagtata 38855281  T
Q  101 ttacatttttccacattt 118  Q
    ||||||||||||||||||    
T  38855282 ttacatttttccacattt 38855299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 42471886 - 42472009
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||||||  |||| | ||||| | | || ||||||||   ||||||||||    
T  42471886 tgagctttttaaaaagtctgttaatttaaataggttaggcttaggcttataaaaaagattatcaggcctataaggtcggcccgtatatgtgtatattaca 42471985  T
Q  106 tttttccacatttattatttatat 129  Q
    |||  ||  |||||||||||||||    
T  42471986 tttccccgaatttattatttatat 42472009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 40355593 - 40355702
Alignment:
Q  4 cttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatatta 103  Q
    |||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| ||||    ||||||| |||  ||||||||   ||||||||    
T  40355593 cttgagctttttaaaaagcctactaatttaattaggtcagacttaggcttataaaaaagcctatgaagcctatcaggccagcccgtatacgagtatatta 40355692  T
Q  104 catttttcca 113  Q
    ||||||||||    
T  40355693 catttttcca 40355702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 12069110 - 12068984
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattac 104  Q
    |||||||||||||||||||||||||||||| ||||   |||||| |||||| |||||| |||||  | ||||||  ||| |  |||||   |||||||||    
T  12069110 ttgagctttttaaaaagcctattaatttaattaggccgggcttaagcttattaaaaagcctatc-aagctatcagaccggcttgtatacgagtatattac 12069012  T
Q  105 atttttccacatttattatttatattta 132  Q
    ||||||||| ||||||||||||||||||    
T  12069011 atttttccatatttattatttatattta 12068984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 34640535 - 34640472
Alignment:
Q  4 cttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||    
T  34640535 cttgagctttttaaaaagcctattaatttaaataggccgaacttaggcttataaaaaagcctat 34640472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5306107 - 5306046
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    |||| ||||||||||||||| | | ||||||||||| ||||||||||| |||||||||||||    
T  5306107 aagcatgagctttttaaaaaacttgttaatttaaatgggttaggcttaagcttataaaaaag 5306046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 38064511 - 38064630
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||| |||||||||||| |||||||||||| ||||   |  |||||||||||||||||         ||||||| |||| | ||||||   |||||    
T  38064511 aagcttgaactttttaaaaagtctattaatttaattaggccggatttaggcttataaaaaag---------cctatcaggccggctcgtatataagtata 38064601  T
Q  101 ttacatttttccacatttattatttatat 129  Q
    |||||||||||||||| |||||| |||||    
T  38064602 ttacatttttccacatctattatatatat 38064630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 30489761 - 30489682
Alignment:
Q  44 gcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattacatttttccacatttattat 123  Q
    ||||||||| ||||||||| |||||   |||||||  ||| ||||||||   |||||||||||||||||| |||||||||    
T  30489761 gcttaggctaataaaaaagcctatcaagcctatcataccggcccgtatataagtatattacatttttccatatttattat 30489682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 39133661 - 39133603
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||   ||||||||||||    
T  39133661 gctttttaaaaagcctatttaagtaaataggtcaggcttaggctatcaaaaaagtctat 39133603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 17913928 - 17913875
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||  |||||||||||||||| |||| | ||||||||| ||||    
T  17913928 agctttttaaaaagtttattaatttaaataggctaggttaaggcttatagaaaa 17913875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16576670 - 16576540
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    ||||||||||||| |||||||||||||||||||| |||||| || | ||||||||||||||  ||||| | |||| || | || ||||||||   |||||    
T  16576670 aagcttgagctttataaaaagcctattaatttaattaggttggggt-aggcttataaaaaatcctatcaggcctaccaggtcggcccgtatatgagtata 16576572  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
    ||||||||||||||||||||||||||||||||    
T  16576571 ttacatttttccacatttattatttatattta 16576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 6636260 - 6636141
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||||| |||||||| ||||   |||||    
T  6636260 aagcatgagctttttaaaaagcctattaatttaaattggttaggcttaggcttataaaaaag---------cctatcaggccgacccatatattagtata 6636170  T
Q  101 ttacatttttccacatttattatttatat 129  Q
    ||||||| | |||||||||||||||||||    
T  6636169 ttacattatcccacatttattatttatat 6636141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29909356 - 29909416
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    |||| ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  29909356 aagcatgagctttttaaaaatcctattaatttaaatgggctaggcttaggcttataaaaaa 29909416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 6628456 - 6628343
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    ||||||||||||||||||||||||||||||| |  ||||||||||| ||||||||||         ||||| | |||||||||||||   ||||||||||    
T  6628456 tgagctttttaaaaagcctattaatttaaattgactaggcttaggc-tataaaaaag---------cctattaggccgacccgtatattagtatattaca 6628367  T
Q  106 tttttccacatttattatttatat 129  Q
    || | |||||||||||||||||||    
T  6628366 ttatcccacatttattatttatat 6628343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 8109785 - 8109656
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataa-aaaagtctatcggacctatcaagccgacccgtatagcggtat 99  Q
    |||| ||| ||||||||||| ||||||||||||||| ||||| ||||| |||||||| ||||||| ||| || |||||| |  | |||||| |   ||||    
T  8109785 aagcatgaactttttaaaaaacctattaatttaaatgggttaagcttaagcttataaaaaaagtcaatcagatctatcaggttggcccgta-atgagtat 8109687  T
Q  100 attacatttttccacatttattatttatatt 130  Q
    |||| |||||| |||||||||||||||||||    
T  8109686 attatattttttcacatttattatttatatt 8109656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 29443086 - 29443030
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    |||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||    
T  29443086 ttgaactttttaaaaagcctattaatttaattaggtcaggtttaagcttataaaaaa 29443030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 3294731 - 3294695
Alignment:
Q  96 gtatattacatttttccacatttattatttatattta 132  Q
    |||||||||||||| ||||||||||||||||||||||    
T  3294731 gtatattacattttaccacatttattatttatattta 3294695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 38600465 - 38600509
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggctt 53  Q
    |||||||||||||||| || | |||||||||| ||||||||||||    
T  38600465 gctttttaaaaagcctgtttagttaaataggtcaggcttaggctt 38600509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 697920 - 697789
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||| | ||||||||||| || || |  |||||||||||||||||| |||||  ||||||||   |||||||||||    ||||    
T  697920 aagcttgagctttttaaaaaacttattaatttaattatgtcaaacttaggcttataaaaaagcctatcaaacctatcagatcgacccgtatatgattata 697821  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
    ||||||||||||||||||||||||||||||||    
T  697820 ttacatttttccacatttattatttatattta 697789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 30591397 - 30591516
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattac 104  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||  |||||   ||||||| |||| ||||||||   |||||||||    
T  30591397 ttgagctttttaaaaagcctattaaattaaataggtcgggcttaggcttataaaaaaacctatcaagcctatcaggccggcccgtatattagtatattac 30591496  T
Q  105 atttttccacatttattatt 124  Q
     |||||||||||||||||||    
T  30591497 ttttttccacatttattatt 30591516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 16166288 - 16166399
Alignment:
Q  1 aagcttgagctttt-taaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtat 99  Q
    |||||||||||||| ||||||||||||||| |||| |||||  ||||||||||||||||||||         |||||||||||||||||||||   ||||    
T  16166288 aagcttgagcttttttaaaaagcctattaacttaattaggtcgggcttaggcttataaaaaag---------cctatcaagccgacccgtatataagtat 16166378  T
Q  100 attacatttttccacatttat 120  Q
    |||||||||||||||||||||    
T  16166379 attacatttttccacatttat 16166399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 22292847 - 22292975
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||| ||||||||| ||||||| ||||||||||||| || ||||| |||| ||||||||||| |||||  ||||||||  |||||| |||||   |||||    
T  22292847 aagcatgagcttttcaaaaagcttattaatttaaatgggctaggcataggtttataaaaaagcctatcaaacctatcagaccgacctgtatatgagtata 22292946  T
Q  101 ttacatttttccacatttattatttatat 129  Q
    ||||| ||| ||| |||||||||||||||    
T  22292947 ttacaatttcccatatttattatttatat 22292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 15055968 - 15055841
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||| |||||||||||||||| ||| |||||||||| || || |||||| ||||| ||||| | |||| | |||||||  |||||| |||||   |||||    
T  15055968 aagcatgagctttttaaaaagtctaataatttaaatgggctaagcttagacttat-aaaaattatatcaggcctatcagaccgacctgtatatgagtata 15055870  T
Q  101 ttacatttttccacatttattatttatat 129  Q
    |||||||| || |||||||||||||||||    
T  15055869 ttacatttctcgacatttattatttatat 15055841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 6138649 - 6138704
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    |||||||||||||||| ||||||||||| ||  | |||||||||||||||||||||    
T  6138649 tgagctttttaaaaagtctattaatttacatgagctaggcttaggcttataaaaaa 6138704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 22298405 - 22298530
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa-gtctatcggacctatcaagccgacccgtatagcggtat 99  Q
    |||| ||||||||| ||||||| ||||||||||||| || |||| |||||||||||||||| | |||||  ||||||||   || || |||||   ||||    
T  22298405 aagcatgagcttttcaaaaagcttattaatttaaat-ggctaggtttaggcttataaaaaaagcctatcaaacctatcagatcggcctgtatatgagtat 22298503  T
Q  100 attacatttttccacatttattattta 126  Q
     ||||||||| ||| ||||||||||||    
T  22298504 gttacattttcccatatttattattta 22298530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 6103477 - 6103534
Alignment:
Q  10 ctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    ||||||| || ||||||| | |||||||||||||||| ||||||| ||||||| ||||    
T  6103477 ctttttataaggcctatttaattaaataggttaggctaaggcttacaaaaaagcctat 6103534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 3026984 - 3027035
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  3026984 gctttttaaaaagcctatttaagtaaataggtcaggcttaggc-tataaaaaa 3027035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 4111083 - 4111134
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  4111083 gctttttaaaaagcctatttaagtaaataggtcaggcttaggc-tataaaaaa 4111134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 1458802 - 1458677
Alignment:
Q  4 cttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatatta 103  Q
    |||||||||||| |||| ||||||||||||| ||||  || ||||||||||||||||||||||||   ||||||| |||| ||||||||   ||||||||    
T  1458802 cttgagcttttttaaaaacctattaatttaattaggccagacttaggcttataaaaaagtctatcaagcctatcaggccggcccgtatacgagtatatta 1458703  T
Q  104 catttttccacatttattatttatat 129  Q
    |||||||||| ||||||||| |||||    
T  1458702 catttttccatatttattatatatat 1458677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 53994701 - 53994829
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattac 104  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||  ||||   ||||| | |||||||||||||   |||||||||    
T  53994701 ttgagctttttaaaaagcctattaatttaattaggctagacttaggcttataaaaaagcatatcaagcctattaggccgacccgtatacaagtatattac 53994800  T
Q  105 a-tttttccacatttattatttatattta 132  Q
    | ||||| || ||||||||||||||||||    
T  53994801 atttttttcatatttattatttatattta 53994829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 13610913 - 13611035
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||| ||||| | ||||||| || | ||| ||||    ||||||| |    
T  13610913 tgagctttttaaaaagcttattaatttaaatgggttaggtttaggcttatagaaaagcctatcaggcctatcaggcgggcccatatatgaatatattata 13611012  T
Q  106 tttttccacatttattatttata 128  Q
    |||| ||||||||||||||||||    
T  13611013 ttttcccacatttattatttata 13611035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 43137171 - 43137301
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||| ||||||||||||| ||||  |||||||||| || ||||||| | |||    |||||| | || ||||||||   |||||    
T  43137171 aagcttgagctttttaaaaaccctattaatttaattaggccaggcttaggc-taaaaaaaagcccatcaagtctatcaggtcggcccgtatacgagtata 43137269  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
    ||||||||||||| ||||||||||||||||||    
T  43137270 ttacatttttccatatttattatttatattta 43137301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 47681708 - 47681831
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    ||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||          ||||||| |||| ||||||||   |||||    
T  47681708 aagcttgagatttttaaaaagtctattaatttaattaggtcaggcttaggcttataaaaaa--------agcctatcaggccggcccgtatacaagtata 47681799  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
    |||||||||| || ||||||||||||||||||    
T  47681800 ttacattttttcatatttattatttatattta 47681831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 7291406 - 7291283
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattac 104  Q
    |||||||||||||||||||||||||||||| |||||  | |||| | |||||||||||||||||  |||||||||| ||  ||||| |   |||||||||    
T  7291406 ttgagctttttaaaaagcctattaatttaattaggtctgacttatgattataaaaaagtctatcaaacctatcaagtcggtccgtaaatgagtatattac 7291307  T
Q  105 atttttccacatttattatttatat 129  Q
    ||||||| | | |||||||||||||    
T  7291306 atttttcaata-ttattatttatat 7291283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 15521790 - 15521726
Alignment:
Q  4 cttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatc 68  Q
    ||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||    
T  15521790 cttgagctttttaaaaagcctattaatttaattaggtcagacttagacttataaaaaagtctatc 15521726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 23602451 - 23602388
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatc 68  Q
    |||| |||||||||||| |||||||||||| ||||| | |||||||||||||||||||||||||    
T  23602451 ttgaactttttaaaaagtctattaatttaattaggtcaagcttaggcttataaaaaagtctatc 23602388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 47304627 - 47304757
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||| ||||||||||| ||||| ||||||| |||||  |||||||||||| |||||||  ||||   ||||||| |||| |||||| |   |||||    
T  47304627 aagcttgaactttttaaaaatcctatcaatttaattaggtcgggcttaggcttacaaaaaagcttatcatgcctatcaggccggcccgtacatgagtata 47304726  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
    |||| ||||| || ||||||||||||||||||    
T  47304727 ttac-ttttttcatatttattatttatattta 47304757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 129
Target Start/End: Original strand, 31763326 - 31763439
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    |||||||||||||||||||||||||||||||| | || | ||||||||||| |||||         | ||||| |||| ||||||||   ||||||||||    
T  31763326 tgagctttttaaaaagcctattaatttaaatatgcta-gattaggcttatagaaaag---------cttatcatgccggcccgtatatgagtatattaca 31763415  T
Q  106 tttttccacatttattatttatat 129  Q
    |||| |||||||||||||||||||    
T  31763416 ttttcccacatttattatttatat 31763439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19901550 - 19901596
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggctt 47  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19901550 aagcttgagctttttaaaaagcatattaatttaaataggtcaggctt 19901596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 129
Target Start/End: Complemental strand, 38069193 - 38069078
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    |||||||||||||| |||||||||| |||||||  ||||||||| |||||||||||   |       ||||||| ||||||||||||   ||||||| ||    
T  38069193 tgagctttttaaaa-gcctattaatctaaatagactaggcttagacttataaaaaaaagt-------ctatcaaaccgacccgtatacgagtatattgca 38069102  T
Q  106 tttttccacatttattatttatat 129  Q
    |||| |||||||||||||||||||    
T  38069101 ttttcccacatttattatttatat 38069078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 51084698 - 51084644
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    |||||||||||||||  ||||||||||||||| |||||| ||||||||| |||||    
T  51084698 agctttttaaaaagctcattaatttaaataggctaggctcaggcttatagaaaag 51084644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 20452613 - 20452672
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    ||||||||| |||| ||||| || ||||||||| ||||| ||||||||||||||| ||||    
T  20452613 agctttttataaagtctatttatataaataggtcaggctaaggcttataaaaaagcctat 20452672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 50689921 - 50689878
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttag 49  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||    
T  50689921 tgagctttttaaaaagcatattaattaaaatgggttaggcttag 50689878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 1180159 - 1180217
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtcta 66  Q
    ||||||||||||||   ||||||||||||||| ||| || ||||||||| |||||||||    
T  1180159 agctttttaaaaagttcattaatttaaataggctagactaaggcttatagaaaagtcta 1180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 19901638 - 19901680
Alignment:
Q  96 gtatattacatttttccacatttattatttatatttagtaata 138  Q
    |||||||| ||||||||| ||||| ||||||||||||||||||    
T  19901638 gtatattatatttttccatatttaatatttatatttagtaata 19901680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 34458690 - 34458633
Alignment:
Q  4 cttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||| ||||||||||||||| |||   ||||||| |||||| |||||    
T  34458690 cttgagctttttaaagagcctattaatttaattagtccaggcttaagcttatcaaaaa 34458633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 20471959 - 20472015
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtct 65  Q
    ||||||||||||| |||||   | |||||||| |||||||||||| |||||||||||    
T  20471959 gctttttaaaaagtctatttgataaaataggtcaggcttaggcttttaaaaaagtct 20472015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 37010706 - 37010757
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  37010706 gctttttaaaaagcctatttaagtaaataggtcaggcttaggc-tataaaaaa 37010757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 9459268 - 9459137
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    ||||||||||||||||||||||||||| |||||| ||||  || |||||||||||||||||| |||||   |||||||   || ||||||||   |||||    
T  9459268 aagcttgagctttttaaaaagcctattgatttaattaggccagacttaggcttataaaaaagcctatcaagcctatcagatcggcccgtatacgagtata 9459169  T
Q  101 ttacatttttccacatttattatttatattta 132  Q
     |||||||||||| |||||||||| |||||||    
T  9459168 ctacatttttccatatttattattgatattta 9459137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 9626333 - 9626211
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    ||||||||||||||||| ||||||||||||| ||||||| ||||||||||| ||||| ||||| | ||||||| || | ||| ||||    ||||||| |    
T  9626333 tgagctttttaaaaagcttattaatttaaatgggttaggtttaggcttatagaaaagcctatcaggcctatcaggcgggcccatatatgaatatattata 9626234  T
Q  106 tttttccacatttattatttata 128  Q
    |||| ||||||||||||||||||    
T  9626233 ttttcccacatttattatttata 9626211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 126
Target Start/End: Original strand, 3525533 - 3525653
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattaca 105  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||   | ||||| | ||  |||||||   |||||||| |    
T  3525533 tgagatttttaaaaagtctattaatttaaatgggttaggcttaggcttataaaaaagcctatcaagcttatcaggtcggtccgtatatgagtatattata 3525632  T
Q  106 tttttccacatttattattta 126  Q
    |||| |||| |||||||||||    
T  3525633 ttttcccacgtttattattta 3525653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 4919738 - 4919797
Alignment:
Q  4 cttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagt 63  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  4919738 cttgaactttttaaaaagcctattaatttaaataggttgggcttagacttataaaaaagt 4919797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3406193 - 3406253
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    |||| ||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  3406193 aagcatgagctttttaaaaaacctattaatttaaatagcttaggcttaggcatataaaaaa 3406253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 5738632 - 5738740
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattac 104  Q
    ||||||||||||||||| |||||||||||| ||||  | | |||||||||||||||||||||||   |||||||   || ||||||||   ||||| |||    
T  5738632 ttgagctttttaaaaagtctattaatttaattaggccaagtttaggcttataaaaaagtctatcaagcctatcagaacggcccgtatacaagtataatac 5738731  T
Q  105 atttttcca 113  Q
    |||||||||    
T  5738732 atttttcca 5738740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 21524279 - 21524160
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattacatt 107  Q
    ||||||||||||||| |||||||  |||| ||||||| || ||||||||||||||||||||   | |||||  |||||| |||||   ||||||||||||    
T  21524279 agctttttaaaaagcatattaat--aaatgggttaggttttggcttataaaaaagtctatcaagcttatcatcccgacctgtatatgagtatattacatt 21524182  T
Q  108 tttccacatttattatttatat 129  Q
    |  | | |||||||||||||||    
T  21524181 tccctaaatttattatttatat 21524160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 131
Target Start/End: Complemental strand, 12218436 - 12218331
Alignment:
Q  26 ttaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattacatttttccacatttattattt 125  Q
    ||||||||| ||||   ||||||||||||||||||||  ||||    |||||| |||| |||||| |   || ||||||||||||||| |||||||||||    
T  12218436 ttaatttaattaggccgggcttaggcttataaaaaagcatatcaagtctatcaggccggcccgtacatgagtctattacatttttccatatttattattt 12218337  T
Q  126 atattt 131  Q
    ||||||    
T  12218336 atattt 12218331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 9823596 - 9823529
Alignment:
Q  25 attaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtata 92  Q
    |||||||||||||||||||| | ||||||||||||||  |||   ||||||||| |||||||| ||||    
T  9823596 attaatttaaataggttagggtaaggcttataaaaaaccctactagacctatcaggccgacccatata 9823529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 10725521 - 10725454
Alignment:
Q  25 attaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtata 92  Q
    |||||||||||||||||||| | ||||||||||||||  |||   ||||||||| |||||||| ||||    
T  10725521 attaatttaaataggttagggtaaggcttataaaaaaccctactagacctatcaggccgacccatata 10725454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 43341669 - 43341614
Alignment:
Q  10 ctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtct 65  Q
    ||||||| ||||||| || | ||||||||||||||||||||||| || ||||||||    
T  43341669 ctttttagaaagcctgtttagttaaataggttaggcttaggcttctagaaaagtct 43341614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 26425803 - 26425749
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    ||||||||||||||| | ||||||||||| ||  ||||||| |||||||||||||    
T  26425803 agctttttaaaaagcttgttaatttaaatgggccaggcttaagcttataaaaaag 26425749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 2732715 - 2732664
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  2732715 gctttttaaaaagcctatttaagtaaataggtcaggcttaggc-tataaaaaa 2732664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 27157155 - 27157183
Alignment:
Q  8 agctttttaaaaagcctattaatttaaat 36  Q
    |||||||||||||||||||||||||||||    
T  27157155 agctttttaaaaagcctattaatttaaat 27157183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 33447141 - 33447193
Alignment:
Q  10 ctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    ||||||||||||||||||   | |||||||| |||||||||||| ||||||||    
T  33447141 ctttttaaaaagcctatttgataaaataggtcaggcttaggcttttaaaaaag 33447193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 44028290 - 44028163
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattac 104  Q
    ||||||||||||||||||||||| |||||| |||||  | ||||||||||||||||||  ||||   ||||||| | || | ||||||    ||||||||    
T  44028290 ttgagctttttaaaaagcctatttatttaattaggtcggacttaggcttataaaaaagcttatcaagcctatcaggtcggcacgtatatgaatatattac 44028191  T
Q  105 atttttccacatttattatttatattta 132  Q
    ||||||||| ||||||||||||||||||    
T  44028190 atttttccatatttattatttatattta 44028163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 9798584 - 9798462
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||||||| ||||||||| ||||   |||||||||||||||||||| | |||   ||||||  |||||||| ||||   |  ||    
T  9798584 aagcttgagctttttaaaaagccttttaatttaattaggccgggcttaggcttataaaaaagcccatcaagcctatccggccgacccatata--tgagta 9798487  T
Q  101 ttacatttttccacatttattattt 125  Q
    ||||||||||||||| |||||||||    
T  9798486 ttacatttttccacaattattattt 9798462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 6130664 - 6130722
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtcta 66  Q
    ||||||||||||||   ||||||||||||||||||| || ||||||||| |||||||||    
T  6130664 agctttttaaaaagttcattaatttaaataggttagactaaggcttatagaaaagtcta 6130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 54650869 - 54650811
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||   ||||||||||||    
T  54650869 gctttttaaaaagcctatttaagtaaataggtcaggcttaggctataaaaaaagtctat 54650811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 4957661 - 4957745
Alignment:
Q  3 gcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgaccc 87  Q
    |||| ||||||||||||||    |||||||||||||| |||||| ||||||||| ||||| |||   | ||||||| ||||||||    
T  4957661 gcttaagctttttaaaaagttcgttaatttaaataggctaggctaaggcttatagaaaagcctactaggcctatcaggccgaccc 4957745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 8700619 - 8700663
Alignment:
Q  18 aaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    |||||||||| | ||||||||| |||||| |||||||||||||||    
T  8700619 aaagcctatttaattaaataggctaggctcaggcttataaaaaag 8700663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9052506 - 9052550
Alignment:
Q  18 aaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    |||||||||| | ||||||||| |||||| |||||||||||||||    
T  9052506 aaagcctatttaattaaataggctaggctcaggcttataaaaaag 9052550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 53200036 - 53200064
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaa 29  Q
    |||||||||||||||||||||||||||||    
T  53200036 aagcttgagctttttaaaaagcctattaa 53200064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 16719733 - 16719799
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    |||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  16719733 aagcttgagctttttaaaaagcctattaatttaattaggccgggcttaggcttataaaaaagtctat 16719799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 40897087 - 40897200
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattacatt 107  Q
    ||||||||||||| | | ||||||||| ||||  || |||||||||||||||||| |||||| ||||| || |||| ||||||||   ||||||||||||    
T  40897087 agctttttaaaaatcttgttaatttaattaggccagacttaggcttataaaaaagcctatcgaacctaccaggccggcccgtatacgagtatattacatt 40897186  T
Q  108 tttccacatttatt 121  Q
    |||||| |||||||    
T  40897187 tttccatatttatt 40897200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34583071 - 34583190
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtata 100  Q
    |||||||||||||||||||||||||||||||||| ||||   ||||||||||| ||||||||         ||||||| |||| | ||||||   |||||    
T  34583071 aagcttgagctttttaaaaagcctattaatttaattaggccgggcttaggcttgtaaaaaag---------cctatcaggccggctcgtatatgagtata 34583161  T
Q  101 ttacatttttccacatttattatttatat 129  Q
    ||||| |||||||||||||||||||||||    
T  34583162 ttacacttttccacatttattatttatat 34583190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 12621887 - 12621759
Alignment:
Q  5 ttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataa-aaaagtctatcggacctatcaagccgacccgtatagcggtatatta 103  Q
    ||||||||||||||||||||||||||| |||||| |  ||||||||||||||| |||||  ||||   ||||||| |  | |||| |||   ||||||||    
T  12621887 ttgagctttttaaaaagcctattaattcaaatagatcgggcttaggcttataaaaaaagcttatcaagcctatcaggttggcccgaatataagtatatta 12621788  T
Q  104 catttttccacatttattatttatattta 132  Q
    |||||| ||| ||||||||||||||||||    
T  12621787 cattttaccatatttattatttatattta 12621759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10542368 - 10542335
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10542368 aagcttgagctttttaaaaagcctattaatttaa 10542335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 5927219 - 5927137
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgta 90  Q
    ||||||||||||| |||||| |||||||||||  |  | |||||||||||||||  ||||| | ||||| | |||||||||||    
T  5927219 agctttttaaaaaacctattcatttaaataggccatacataggcttataaaaaatcctatcagtcctataaggccgacccgta 5927137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 24427230 - 24427288
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctat 67  Q
    |||||||||||||||||||   | |||||||  |||||||||||| |||||||||||||    
T  24427230 gctttttaaaaagcctatttgataaaataggccaggcttaggcttttaaaaaagtctat 24427288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 35362514 - 35362397
Alignment:
Q  12 ttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtatagcggtatattacatttttc 111  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||| | ||||| | |||||||||| |  |||||||   |||||||||||||| |    
T  35362514 ttttaaaaagcctattaatttaaatgagctaggcttaggcttataaaaacgcctatcaggcctatcaagctggtccgtatatgagtatattacattttcc 35362415  T
Q  112 cacatttattatttatat 129  Q
     | |||||||||| ||||    
T  35362414 tatatttattattcatat 35362397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3289635 - 3289544
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccgacccgtata 92  Q
    |||||| | ||||||||||||||||||||||||| |||||  || ||||||||||||||||  |||||  |||||||| |||| ||||||||    
T  3289635 aagcttaatctttttaaaaagcctattaatttaattaggtcgggtttaggcttataaaaaaccctatcaaacctatcaggccggcccgtata 3289544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38669596 - 38669656
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    |||||||||||||||||||||||||||||||||| |||||  || ||| ||||||||||||    
T  38669596 aagcttgagctttttaaaaagcctattaatttaattaggtcgggtttaagcttataaaaaa 38669656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 28093649 - 28093704
Alignment:
Q  6 tgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||| |||||||||||||||  |||||||||| ||||||||||||    
T  28093649 tgagctttttaaaaaacctattaatttaaatgagttaggcttaagcttataaaaaa 28093704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51127142 - 51127087
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttata 56  Q
    |||||| |||||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  51127142 aagcttaagctttttaaaaaggctattaatttaattaggtcaggcttatgcttata 51127087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 8772578 - 8772544
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8772578 aagcttgagctttttaaaaagcctattaatttaaa 8772544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 13642872 - 13642747
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa-gtctatcggacctatcaagccgacccgtatagcggtat 99  Q
    |||| ||||||||| ||||||| ||||||||||||| || |||| |||||||||||||||| | |||||  ||||||||   || || |||||   ||||    
T  13642872 aagcatgagcttttcaaaaagcttattaatttaaat-ggctaggtttaggcttataaaaaaagcctatcaaacctatcagatcggcctgtatatgagtat 13642774  T
Q  100 attacatttttccacatttattattta 126  Q
     ||||||||| ||| ||||||||||||    
T  13642773 gttacattttcccatatttattattta 13642747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 9857335 - 9857208
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtc-tatcggacctatcaagccgacccgtatagcggtat 99  Q
    |||||||||||||||||||| ||||||||||||| ||||   || ||||||||||||||||  | ||||   ||||||| |||| | ||||||   | ||    
T  9857335 aagcttgagctttttaaaaa-cctattaatttaattaggccgggtttaggcttataaaaaaaacctatcaagcctatcaggccggctcgtatataagcat 9857237  T
Q  100 attacatttttccacatttattatttatat 129  Q
    |||||||||| ||||||||||||| |||||    
T  9857236 attacatttt-ccacatttattatatatat 9857208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 40707808 - 40707868
Alignment:
Q  1 aagcttgagctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    |||||||||||||||||||| ||||| ||||||  |||||  | |||||||||||||||||    
T  40707808 aagcttgagctttttaaaaaacctatcaatttatttaggtcggacttaggcttataaaaaa 40707868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 6889205 - 6889248
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggct 52  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||    
T  6889205 gctttttaaaaagcttattaatgtaaataggtcaggcttaggct 6889248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 13142912 - 13142837
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtctatcggacctatcaagccg 83  Q
    |||||||||||||||  ||||||||||||||| |||| | ||||||||| ||||| |||   |||||||| |||||    
T  13142912 agctttttaaaaagctcattaatttaaataggctaggttaaggcttatagaaaagcctactagacctatctagccg 13142837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 9857160 - 9857119
Alignment:
Q  147 ttattgatccttcaaattctcatagcacagttattcttattc 188  Q
    |||||||||||||||||||||||| |||| ||||| ||||||    
T  9857160 ttattgatccttcaaattctcataccacaattattattattc 9857119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 31225280 - 31225331
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  31225280 gctttttaaaaagcctatttaagtaaataggtcaggcttaggc-tataaaaaa 31225331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 31955274 - 31955318
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggctt 53  Q
    ||||||||||||| ||||| | |||||||||| ||||||||||||    
T  31955274 gctttttaaaaagactatttagttaaataggtcaggcttaggctt 31955318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 34049641 - 34049685
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggctt 53  Q
    |||||||||||||||| || | |||||||||| ||||||||||||    
T  34049641 gctttttaaaaagcctgttgagttaaataggtcaggcttaggctt 34049685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 39860161 - 39860212
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaa 61  Q
    ||||||||||||||||||| |  ||||||||| |||||||||| |||||||||    
T  39860161 gctttttaaaaagcctatttaagtaaataggtcaggcttaggc-tataaaaaa 39860212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 35254 - 35200
Alignment:
Q  8 agctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaag 62  Q
    |||||||||||||||  ||||||||||||||| |||||| | ||||||| |||||    
T  35254 agctttttaaaaagctcattaatttaaataggctaggctaatgcttatagaaaag 35200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 3115 - 3171
Alignment:
Q  9 gctttttaaaaagcctattaatttaaataggttaggcttaggcttataaaaaagtct 65  Q
    ||||||||||||| |||||   | |||||||| |||||||||||| |||||||||||    
T  3115 gctttttaaaaagtctatttgataaaataggtcaggcttaggcttttaaaaaagtct 3171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University