View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_high_8 (Length: 662)

Name: NF2722_high_8
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_high_8
NF2722_high_8
[»] chr2 (1 HSPs)
chr2 (1-649)||(44179531-44180186)


Alignment Details
Target: chr2 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 649
Target Start/End: Complemental strand, 44180186 - 44179531
Alignment:
Q  1 tgtaggaggttgaaagctcaggtatgatattatatgtatatcttagtggacaaatgattttaatcccaacaataaaatcaaaggg-----tatgtgtaac 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||    
T  44180186 tgtaggaggttgaaagctcaggtatgatattatatgtatatcttagtggacaaatgattttaatcccaacaataaaatcaaagggcgatatatgtgtaac 44180087  T
Q  96 nnnnnnn---gggcgatacatgtgcaattttggattagaatcatgactctttcctaagaatattgacgaatgaaaacactattttaagttacgtagcaag 192  Q
              ||| |||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  44180086 caaaaaaaaagggtgatacatgtgcaattttgaattagaatcatgactcttccctgagaatattgacgaatgaaaacactattttaagttatgtagcaag 44179987  T
Q  193 cgacatcggaactccaatatttttagatgatgcaatctataattgttgtctgtctcctttaagacatcttgtggatttgacccgtaaaatattgacggaa 292  Q
    |||||||||||||||||| |||||||||||| || ||||||||| |||| |||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  44179986 cgacatcggaactccaatgtttttagatgatacagtctataattattgtttgtctcctttcagacattttgtagatttgacccgtaaaatattgacggaa 44179887  T
Q  293 taatggtgatacataagtaattttggaggaatcataaatcttctctaaaatattggcgaatgaaaacactatttaaagtagcaaacgacatcaaaactcc 392  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44179886 taatggtgatacataagcaattttgaaggaatcataaatcttctctaaaatattggcgaatgaaaacactatttaaagtagcaaacgacatcaaaactcc 44179787  T
Q  393 aatgtctttagatgatgcaattcataactgttgccggtctcctttatgaccttttacgagccttatccaaaacgtcaaaaaaggacaccttcacataata 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44179786 aatgtctttagatgatgcaattcataactgttgccggtctcctttctgaccttttacgagccttatccaaaacgtcaaaaaaagacaccttcacataata 44179687  T
Q  493 cacaataatctatttttgataaactatgaatgagacatatattatatctgaaatttagaagcatca--taaggttaaatataatacataatttttgacac 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||||||||||  ||    
T  44179686 cacaataatctatttttgataaactatgaatgagacatatattatatctgaaacttagaagcatcatctaaggttaaatagaatacataatttttg--ac 44179589  T
Q  591 atttaatattttaaattttaatgagtgaagggagaatccgataaaattggtttaacatg 649  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||    
T  44179588 atttaatattttaaa-tttaatgagtgaaatgagaatccgataaaattggtttaacatg 44179531  T

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