View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_10 (Length: 550)
Name: NF2722_low_10
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 22383980 - 22383474
Alignment:
| Q |
16 |
caaatacccgcataaaacgtcttcacatccaaccattagactataacaacgaggacgattgcatataatcacagtattattgaaataaaataagagattt |
115 |
Q |
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| T |
22383980 |
caaatacccgcataaaacgtcttcacatccaaccattagactataacaatgaggacgattgcatataatcacagtattattgaaataaaataagagattt |
22383881 |
T |
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| Q |
116 |
cattttacttgtcaaataaaacacttaaacggccgcatggatattgagtggacaaccaacccaaattgcgtgtagtaagcaatccatgcactcacgcagt |
215 |
Q |
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| T |
22383880 |
cattttactcgtcaaatgagacactcgaacggccgcatggatatcgagtggacgaccaacccaaattgcgtgtagtaagcaatccatgcactcacgcagt |
22383781 |
T |
|
| Q |
216 |
ctgtaaaatcaacactattcatgcgagatcgtacaattcatatcataaactaaacaaaccaatttcaaccacccaaatcatatcaatggcaaggattgca |
315 |
Q |
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| T |
22383780 |
cagtaaaatcaacgctattcatgtgagatcgtacaattgatatcataaactacacaaaccaatttcaaccacccaaatcatatcaatggtcaggattgca |
22383681 |
T |
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| Q |
316 |
actgcaggggattcagttccctgatggacccatttttgattgaacatgacttggaaggttcatgctttcaatttc-attaaaagaaac--aatacacatt |
412 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
22383680 |
actgcagcggattcagttccctgatggacccatttttgattga-----------aaggttcatgctttcaatttcaattaaaagaaacaaaatacacatt |
22383592 |
T |
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| Q |
413 |
tcaacaaagagaataataatcacttccaagaatatgcgacacgaaagagtttcaaatagtacactagcatcacttcactaaaattaaagcacaaagtaaa |
512 |
Q |
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| T |
22383591 |
tcaacaaagagaataataatcagttccaataatatgggacacgaaagagtttcaaatagtacactagcatcacttcactaaaattaaagcacaaagtaaa |
22383492 |
T |
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| Q |
513 |
ataactgaaaaccgaata |
530 |
Q |
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| T |
22383491 |
ataactgaaaaccgaata |
22383474 |
T |
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