View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_12 (Length: 462)
Name: NF2722_low_12
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 235 - 448
Target Start/End: Complemental strand, 2348802 - 2348589
Alignment:
| Q |
235 |
tgtttgtggatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
334 |
Q |
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| T |
2348802 |
tgtttgtgaatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
2348703 |
T |
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| Q |
335 |
ttgaaaattaccacggctaagattatcggattgagttacgattaggtagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
434 |
Q |
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| T |
2348702 |
ttgaaaattaccacggctaagattatcggattgagttacgattagatagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
2348603 |
T |
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| Q |
435 |
caaccacatgcccc |
448 |
Q |
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| T |
2348602 |
caaccacatgcccc |
2348589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 2349018 - 2348867
Alignment:
| Q |
21 |
ataggggaattagagaaattaggagtgcaattgttgtagcgtttattaaactgcttaaatctaaatccattgtagctagatggtgttgtgttttggatga |
120 |
Q |
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| T |
2349018 |
ataggggaattagagaaattaggagtgcaattgttgtggcgtttattaaactgcttaaatctaaatccattgtagctagatggtgttgtgttttgtacga |
2348919 |
T |
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| Q |
121 |
ggttggtggatagaagtagaatt--agttgtattactcttgaatgctagctt |
170 |
Q |
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| T |
2348918 |
ggttggtggatagaagtagaattagagttgtattactcttgaatgctagctt |
2348867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 2348349 - 2348287
Alignment:
| Q |
317 |
taagtgttgttttggaatttgaaaattaccacggctaagattatcggattgagttacgattag |
379 |
Q |
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| T |
2348349 |
taagtgttgttttcgaaattgaaaatcaccatcgaaaagattatcggattgagttacgattag |
2348287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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