View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2722_low_14 (Length: 432)
Name: NF2722_low_14
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 44088187 - 44087974
Alignment:
| Q |
19 |
atgagactatgggttagcacttagaacctaggactataaggatttggatgtcacgcatcaattgtgtgatgcatttattattcatagttgtctgatctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44088187 |
atgagactatgggttagcacttagaacctaggactataaggatttggatgtcacgcatcaattgtgtgatgcatttattattcatagttgtctgatctta |
44088088 |
T |
|
| Q |
119 |
aatcaatggcgtagattatttaaagatgatttgttgaaggcgtaattgactaatgtcaaagcaatggttgagatcaactaatgcatataaatgtgtgttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44088087 |
aatcaatggcgtagattatttaaagatgatttgttgaaggtgtaattgactaatgtcaaagcaatggtcgagatcaactaatgcatataaatgtgtgttt |
44087988 |
T |
|
| Q |
219 |
ttgttaatgtaggg |
232 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
44087987 |
ttgttaatggaggg |
44087974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 242 - 432
Target Start/End: Complemental strand, 44087922 - 44087732
Alignment:
| Q |
242 |
ccatattagtagtccttcacttcatttgtaactgactttagtggttgaacttagtgacatcatagtattctatcaaaggttacataaaggtgactcagac |
341 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44087922 |
ccatatcagtagtccttcacttaatttgtaactgactttagtggttgaacttagtgacatcatagtattctatctaaggttacataaaggtgactcagac |
44087823 |
T |
|
| Q |
342 |
ttctagaaccacagtctaacaggaagtttctaagaaaatcagtggatcttcgacctaacactgtccatgagttttgtggtctttaatgacc |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44087822 |
ttctagaaccacagtctaacaggaagtttctaagaaaatcagtggatctttgacctaacactgtccatgagttttgtggtctttaatgacc |
44087732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University