View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_15 (Length: 422)
Name: NF2722_low_15
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 47355891 - 47355493
Alignment:
| Q |
1 |
tcacatgacaattaaaacactaacatttgttaatnnnnnnncacgaattaaaacgatttcccattatcacctttaaaaacaaagtttcaataggatgact |
100 |
Q |
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|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47355891 |
tcacataacaattaaaacagtaacatttgttaataaaaaaacacgaattaaaacgatttcccattatcaccttcaaaaacaaagtttcaataggatgact |
47355792 |
T |
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| Q |
101 |
tgagagaaatattttggtggtcacctcaataaaaatacatactcatacannnnnnnnnnnnnngtccgtccacctaaatggtgtgcctaaatcttgtgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47355791 |
tgagagaaatattttggtggtcacctcaataaaaatacatactcatacatttttttcttttttgtccgtccacctaaatggtgtgcctaaatcttgtgac |
47355692 |
T |
|
| Q |
201 |
cacaaactttcttgtgatttgatctagtaatcaacagtgtctgctgtggtgatgaggcggtaaccaaaatagatacaagcaaaaataattggaacaaaga |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47355691 |
cacaaattttcttgtgatttgatctagtaatcaacagtgtctgctatggtgatgaggcggtaaccaaaatagatacaagcaaaaataattggaacaaaga |
47355592 |
T |
|
| Q |
301 |
actcgagaaatgtcacagttttggacgtactgtcctctttgatcacaaaagcactcatttctttgctccttggttcattgtcctcaacaacatccttac |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47355591 |
actcgagaaatgtcacagttttggacgtactgtcctctttgatcacaaaagcactcatttctttgctccttggttcattgtcctcaacaacatccttac |
47355493 |
T |
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