View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_low_16 (Length: 420)

Name: NF2722_low_16
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_low_16
NF2722_low_16
[»] chr5 (16 HSPs)
chr5 (62-281)||(17935509-17935729)
chr5 (95-209)||(17964342-17964456)
chr5 (62-181)||(35105137-35105251)
chr5 (62-220)||(28663576-28663734)
chr5 (203-280)||(17945787-17945865)
chr5 (62-130)||(21154166-21154235)
chr5 (62-130)||(21161301-21161370)
chr5 (82-145)||(12026246-12026309)
chr5 (65-150)||(29948365-29948450)
chr5 (62-174)||(40786726-40786838)
chr5 (62-185)||(29742082-29742203)
chr5 (62-147)||(25590095-25590180)
chr5 (84-216)||(19699462-19699594)
chr5 (102-185)||(18079943-18080025)
chr5 (114-185)||(24213289-24213360)
chr5 (62-183)||(24228230-24228351)
[»] chr1 (12 HSPs)
chr1 (86-281)||(18188138-18188323)
chr1 (66-185)||(27317706-27317824)
chr1 (152-259)||(14762264-14762372)
chr1 (66-185)||(18640451-18640570)
chr1 (62-183)||(15552970-15553090)
chr1 (91-184)||(145352-145443)
chr1 (62-109)||(5032496-5032543)
chr1 (114-185)||(11444031-11444102)
chr1 (86-180)||(27417377-27417470)
chr1 (66-159)||(18643168-18643261)
chr1 (140-185)||(29547856-29547901)
chr1 (140-185)||(29530201-29530246)
[»] scaffold0214 (1 HSPs)
scaffold0214 (142-321)||(29535-29715)
[»] chr8 (6 HSPs)
chr8 (140-259)||(17909817-17909937)
chr8 (62-185)||(12642387-12642508)
chr8 (65-185)||(23429684-23429803)
chr8 (62-185)||(29185484-29185607)
chr8 (62-131)||(28350516-28350585)
chr8 (62-181)||(22274835-22274952)
[»] chr6 (6 HSPs)
chr6 (62-329)||(21142933-21143202)
chr6 (62-185)||(25398215-25398337)
chr6 (76-216)||(17275056-17275196)
chr6 (62-329)||(17190629-17190895)
chr6 (73-185)||(19441097-19441210)
chr6 (76-175)||(17270121-17270220)
[»] chr2 (14 HSPs)
chr2 (62-322)||(19084441-19084707)
chr2 (129-331)||(19089460-19089665)
chr2 (62-185)||(25232099-25232222)
chr2 (62-185)||(25225794-25225917)
chr2 (62-282)||(23453533-23453758)
chr2 (62-221)||(16443218-16443376)
chr2 (67-220)||(11312159-11312312)
chr2 (66-185)||(26195429-26195547)
chr2 (62-117)||(17830694-17830749)
chr2 (62-185)||(18557478-18557598)
chr2 (63-158)||(44117324-44117422)
chr2 (264-333)||(26538859-26538928)
chr2 (223-322)||(17843068-17843167)
chr2 (86-220)||(7384774-7384907)
[»] chr7 (12 HSPs)
chr7 (141-275)||(34226054-34226189)
chr7 (141-275)||(34230182-34230317)
chr7 (174-331)||(20362648-20362806)
chr7 (62-183)||(20125318-20125438)
chr7 (62-183)||(7578641-7578761)
chr7 (62-185)||(42939882-42940003)
chr7 (63-185)||(42937582-42937702)
chr7 (294-325)||(3590565-3590596)
chr7 (82-183)||(23818659-23818760)
chr7 (145-210)||(29332807-29332871)
chr7 (62-183)||(35338915-35339036)
chr7 (149-185)||(37479581-37479617)
[»] chr3 (9 HSPs)
chr3 (62-181)||(20463075-20463193)
chr3 (62-185)||(10937385-10937507)
chr3 (70-143)||(27544627-27544700)
chr3 (70-183)||(27547329-27547433)
chr3 (294-330)||(7117276-7117312)
chr3 (124-182)||(20458771-20458829)
chr3 (82-159)||(19647423-19647500)
chr3 (82-182)||(3170085-3170184)
chr3 (22-56)||(37710086-37710120)
[»] scaffold0496 (1 HSPs)
scaffold0496 (159-282)||(9103-9229)
[»] scaffold0184 (1 HSPs)
scaffold0184 (152-329)||(10798-10980)
[»] chr4 (3 HSPs)
chr4 (68-180)||(20679210-20679319)
chr4 (345-413)||(16006773-16006841)
chr4 (62-185)||(8563660-8563782)
[»] scaffold0248 (1 HSPs)
scaffold0248 (144-220)||(16187-16263)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 62 - 281
Target Start/End: Complemental strand, 17935729 - 17935509
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  17935729 attgcaagatattgtacaccatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattgcttctcaagtgtgtcttttacattga 17935630  T
Q  162 aatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaatataggcattcactct 260  Q
     ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  17935629 gatataagtcctatttatagaacacacatgtgataagttacaagtacatgaagagccataagactaagtgtcattaactatcaatatatgcattcactct 17935530  T
Q  261 aacgagttaaggaacatagaa 281  Q
     | ||||||||||| ||||||    
T  17935529 taggagttaaggaatatagaa 17935509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 17964456 - 17964342
Alignment:
Q  95 gagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggacagacatgtgg 194  Q
    ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||||||| || ||||||||| ||||||||||||| ||||||||    
T  17964456 gagaaagggatgaagagataacaaaagagtatgttgtattgcttctcaagtgtgtcctttacatcgagatataagtcatatttataggacacacatgtgg 17964357  T
Q  195 taagttacaagtaca 209  Q
    |||||||||||||||    
T  17964356 taagttacaagtaca 17964342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 35105251 - 35105137
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| || |||||||| | |    
T  35105251 attgcaagatattgtacaacatagaaaagtggagagaaagggat----agataacaaaagagtatgttgtattacttctcaagtatg-tctttacactaa 35105157  T
Q  162 aatataagtcctatttatag 181  Q
    ||||| ||||||||||||||    
T  35105156 aatatgagtcctatttatag 35105137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 28663576 - 28663734
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||||||||||||| | |||||||||| ||||| || || ||||||||| ||| |||||||  || |||||||||||||||||||       
T  28663576 attgcaagatattgtacaacatagaaaattagagagaaaaggatagagggagaacaaaagaatatattgtattgtttctcaagtgtgttctttacatgac 28663675  T
Q  162 aatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccat 220  Q
    ||| ||  |||||||||||||| | | | || |||| ||| || |||||||||||||||    
T  28663676 aatgtagatcctatttataggatacaaaagttgtaacttataattacatgaagagccat 28663734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 17945865 - 17945787
Alignment:
Q  203 aagtacatgaagagccataa-actaagtgtcattaactatgaatataggcattcactctaacgagttaaggaacataga 280  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||    
T  17945865 aagtacatgaagagccataagactaagtgtcattaactatgaatataggcatttactcttaggagttaaggaatataga 17945787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 21154235 - 21154166
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaa-gagtatgttg 130  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  21154235 attgcaagatattgtacaacatagaagaacagagagaaagggataaagagataacaaaatgagtatgttg 21154166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 21161370 - 21161301
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaa-gagtatgttg 130  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||    
T  21161370 attgcaagatattgtacaacatagaagaacagagagaaagggataaagagataacaaaatgagtatgttg 21161301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 12026246 - 12026309
Alignment:
Q  82 atagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagt 145  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  12026246 atagaagagtggagagaaagggataaagagagaacaaaagagtatgtcgtattacttctcaagt 12026309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 29948365 - 29948450
Alignment:
Q  65 gcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgtt 150  Q
    |||||||||||| |||||| ||||||||||||||||  |||| || || ||||||||||||| ||||||| ||| |||||||||||    
T  29948365 gcaagatattgtgcaacatcgaagagtagagagaaaatgatacagggagaacaaaagagtatattgtattgcttttcaagtgtgtt 29948450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 40786838 - 40786726
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||||| || |  ||| |||| |||||||||||  | ||||||| |||| |||||| | |||||||||||  |||||||||||||||||||      
T  40786838 attgcaagatattataaagtatataagaatagagagaaagaaacaaagagagaacataagagtgtattgtattacttcacaagtgtgttctttacattac 40786739  T
Q  162 aatataagtccta 174  Q
    |||||| ||||||    
T  40786738 aatataggtccta 40786726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 29742082 - 29742203
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||| |||||||| |  ||| |||| |||||||||||| |||||| || ||||||||||||| |||||||||||  |||||||| || |||||||      
T  29742082 attgcaaaatattgtaaagtatataagaatagagagaaagg-ataaagggagaacaaaagagtatattgtattacttcacaagtgtg-tcattacatttt 29742179  T
Q  162 aatataagtcctatttataggaca 185  Q
    ||| || |||||||||||| ||||    
T  29742180 aatgtaggtcctatttatatgaca 29742203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 25590180 - 25590095
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgt 147  Q
    |||||| |||||||||||||||| || |||||||||||| |||||||| || || |||||||||| ||| ||| |||  |||||||    
T  25590180 attgcatgatattgtacaacatataaaagtagagagaaaaggataaagtgagaataaaagagtatattgcattgcttcacaagtgt 25590095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 19699594 - 19699462
Alignment:
Q  84 agaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttatagga 183  Q
    |||||||||||||||||| ||||| | ||||| || ||||||| ||  |||||||  ||||||||||||||||||   ||| || ||| |||||||||||    
T  19699594 agaagagtagagagaaagagataatgggataagaagagagtatattacattactttacaagtgtgttctttacatgacaatgtatgtcatatttatagga 19699495  T
Q  184 cagacatgtggtaagttacaagtacatgaagag 216  Q
     | | | || |||| |||||  |||||||||||    
T  19699494 tacaaaagttgtaacttacagttacatgaagag 19699462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 18079943 - 18080025
Alignment:
Q  102 ggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    |||||||| || ||||| ||||||| |||||||||||  |||||||| || |||||||| ||| || |||||||||||||||||    
T  18079943 ggataaagggagaacaagagagtatattgtattacttcacaagtgtg-tcattacattgtaatgtaggtcctatttataggaca 18080025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 24213289 - 24213360
Alignment:
Q  114 aacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    |||| |||||| | |||||||||||  ||||| ||| |||||||||  |||||| |||||||||||||||||    
T  24213289 aacataagagtgtattgtattacttcacaagtatgtactttacattacaatataggtcctatttataggaca 24213360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 24228230 - 24228351
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||||| || |  ||| |||| |||||||||||  | ||||||| | || || | | | |||||||||||  ||||||||| |||||||||      
T  24228230 attgcaagatattataaagtatataagaatagagagaaagaaacaaagagagagcataataatgtattgtattacttcacaagtgtgtactttacattac 24228329  T
Q  162 aatataagtcctatttatagga 183  Q
    ||||||  ||||||||||||||    
T  24228330 aatatagatcctatttatagga 24228351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 86 - 281
Target Start/End: Original strand, 18188138 - 18188323
Alignment:
Q  86 aagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||           |||||| ||||||||||||||    
T  18188138 aagagtagagagaaagggataaagagataacaaaagagtatgttatattacttctcaagtgtgttttt-----------ataagttctatttataggaca 18188226  T
Q  186 gacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaatataggcattcactctaacgagttaaggaacatagaa 281  Q
     ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| ||||||||||| | ||||||||||| ||||||    
T  18188227 cacatgtggtaagttacaagtagatgaagagccataagactaagtatcattaactatgaatataagcattcactcttaggagttaaggaatatagaa 18188323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 27317824 - 27317706
Alignment:
Q  66 caagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaata 165  Q
    ||||||||||||||||||||||||||||||||||   ||||||| || ||||| ||||||| ||||||||||| ||||||||| ||||||||||  ||||    
T  27317824 caagatattgtacaacatagaagagtagagagaacaagataaagggagaacaagagagtatattgtattacttctcaagtgtg-tctttacatttcaata 27317726  T
Q  166 taagtcctatttataggaca 185  Q
    || ||| |||||||||||||    
T  27317725 taggtcatatttataggaca 27317706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 14762264 - 14762372
Alignment:
Q  152 tttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaatatagg 250  Q
    ||||||||| |||||||||||||||||||| ||| | ||||  |||||||||||||||||||||| ||||| ||||| ||| | |||| || |||||| |    
T  14762264 tttacattgcaatataagtcctatttatagaacacaaatgtaataagttacaagtacatgaagagtcataagactaaatgtaaataacaataaatatatg 14762363  T
Q  251 cattcactc 259  Q
    |||||||||    
T  14762364 cattcactc 14762372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 18640451 - 18640570
Alignment:
Q  66 caagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaata 165  Q
    |||||||||||| || ||| |||| ||||| |||||||||||| ||| ||||| | ||||| |||||||||||   ||||||||||||||||||   |||    
T  18640451 caagatattgtaaaatatataagaatagagtgaaagggataaacagagaacaagatagtatattgtattacttcaaaagtgtgttctttacattattata 18640550  T
Q  166 taagtcctatttataggaca 185  Q
    || | |||||||||||||||    
T  18640551 tatgacctatttataggaca 18640570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 15553090 - 15552970
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||||| ||||||||| || |||| |||||||  ||||||| || || || | ||||| |||||||||||  |||||||| || ||||||||     
T  15553090 attgcaagatattatacaacataaaaaagtaaagagaaaaagataaagggagaataagatagtatattgtattacttcacaagtgtg-tcattacattgc 15552992  T
Q  162 aatataagtcctatttatagga 183  Q
    |||||| |||||||||||||||    
T  15552991 aatataggtcctatttatagga 15552970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 145352 - 145443
Alignment:
Q  91 tagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggac 184  Q
    |||||||||||| ||||||||| ||||| |||||||  |||||| ||| ||||||||| || |||||||| ||| || ||||||||||||||||    
T  145352 tagagagaaagg-ataaagagagaacaagagagtatagtgtattgcttctcaagtgtg-tcattacattgtaatgtaggtcctatttataggac 145443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 5032496 - 5032543
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaag 109  Q
    |||||||||||||||||||||||||| ||||||||||||  |||||||    
T  5032496 attgcaagatattgtacaacatagaaaagtagagagaaaatgataaag 5032543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 11444031 - 11444102
Alignment:
Q  114 aacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    |||| |||||||| |||||||||||  |||||||||  || |||||  ||||||||||||||||||||||||    
T  11444031 aacataagagtatattgtattacttcacaagtgtgtaattcacattataatataagtcctatttataggaca 11444102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 27417377 - 27417470
Alignment:
Q  86 aagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttata 180  Q
    |||| |||||||||||| |||||||||||| |  |||||||  |||||| ||| ||||||||| ||||||||||  ||||  |||||||||||||    
T  27417377 aagaatagagagaaaggaataaagagataagatgagagtatactgtattccttctcaagtgtg-tctttacattataatacgagtcctatttata 27417470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 18643168 - 18643261
Alignment:
Q  66 caagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacatt 159  Q
    |||||||||||| |  ||| |||| ||||  |||| ||||||||||| || || | ||||| |||||||||||  |||||||||||||||||||    
T  18643168 caagatattgtaaagtatataagaatagattgaaaaggataaagagagaataacatagtatattgtattacttcacaagtgtgttctttacatt 18643261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 29547901 - 29547856
Alignment:
Q  140 tcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    ||||||||||||||||||||  |||||| |||||||||||||||||    
T  29547901 tcaagtgtgttctttacattacaatataggtcctatttataggaca 29547856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 29530246 - 29530201
Alignment:
Q  140 tcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    ||||||||||||||||||||  |||||| |||||||||||| ||||    
T  29530246 tcaagtgtgttctttacattacaatataggtcctatttatatgaca 29530201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 142 - 321
Target Start/End: Original strand, 29535 - 29715
Alignment:
Q  142 aagtgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaacta 240  Q
    ||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||| || ||| ||    
T  29535 aagtgtgttctttacatagaaatataagtcctatttataggacacaaatgtggtaagttacaagtacatgaaaagccataagactaagtgccaataaata 29634  T
Q  241 tgaatataggcattcactctaacgagttaaggaacatagaaaccttgtgaaatatggacatccacatcatattaatattat 321  Q
    |||||||||||||||||||  | |||||||| ||||| |||| | |  |||| ||||||||||| ||||||||||||||||    
T  29635 tgaatataggcattcactcataggagttaagaaacatggaaagccttagaaaaatggacatccaaatcatattaatattat 29715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 140 - 259
Target Start/End: Complemental strand, 17909937 - 17909817
Alignment:
Q  140 tcaagtgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccata-aactaagtgtcattaac 238  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  17909937 tcaagtgtgttctttacattgagatataagtcctatttataggacacacatgtggtaagttacaagtacatgaagagccataggactaagtgtcattaac 17909838  T
Q  239 tatgaatataggcattcactc 259  Q
    |||||||||||||||||||||    
T  17909837 tatgaatataggcattcactc 17909817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 12642387 - 12642508
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||| ||| ||||||  |||||| ||||||||    |||||| |||    
T  12642387 attgcaagatattgtacaacataaaagagtagagagaaggggataaagagagaacaaa-gagcatgttgcgttacttctcaagtgtaca-tttacaatga 12642484  T
Q  162 aatataagtcctatttataggaca 185  Q
    | |||| |||||||||||||||||    
T  12642485 attataggtcctatttataggaca 12642508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 23429803 - 23429684
Alignment:
Q  65 gcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaat 164  Q
    |||||||||||||||| |||||| |||||||||||  |||||||| || ||||| ||||||| |||| ||||||  |||||||| || |||||||| |||    
T  23429803 gcaagatattgtacaatatagaaaagtagagagaagaggataaagggagaacaagagagtatattgttttacttcacaagtgtg-tcattacattgtaat 23429705  T
Q  165 ataagtcctatttataggaca 185  Q
     || |||||||||||||||||    
T  23429704 gtaggtcctatttataggaca 23429684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 29185484 - 29185607
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||| |||||||| |  ||| |||| |||||| ||||| ||||||| | ||||  ||||||| ||| |||||||  |||||||||| ||||||||      
T  29185484 attgcaatatattgtaaagtatataagaatagagaaaaaggaataaagaaagaacatgagagtatattgcattacttcacaagtgtgttttttacattac 29185583  T
Q  162 aatataagtcctatttataggaca 185  Q
    |||||| |||||||||||||||||    
T  29185584 aatatatgtcctatttataggaca 29185607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 28350516 - 28350585
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgt 131  Q
    |||||||||||||||||||||||||| | ||||||||||  ||||||| || ||||| ||||||| ||||    
T  28350516 attgcaagatattgtacaacatagaaaactagagagaaaaagataaagggagaacaatagagtatattgt 28350585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 181
Target Start/End: Complemental strand, 22274952 - 22274835
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||| |  ||| |||| |||||||||| |||||||| || ||||  ||||||| |||||||||||  || || ||||  ||||||||     
T  22274952 attgcaagatattgtaaagtatataagaatagagagaaa-ggataaagggagaacaggagagtatattgtattacttcacatgtatgtt-attacattgt 22274855  T
Q  162 aatataagtcctatttatag 181  Q
    ||| || |||||||||||||    
T  22274854 aatgtaggtcctatttatag 22274835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 329
Target Start/End: Complemental strand, 21143202 - 21142933
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||  ||||||||||||||||  ||||||||| |||| ||| || ||||| ||||||||||| |||||||  |||||||||||||||||||||    
T  21143202 attgcaagatcgtgtacaacatagaagac-agagagaaaaggatgaagggagaacaagagagtatgttgcattacttcacaagtgtgttctttacattga 21143104  T
Q  162 aatataagtcctatttataggaca-gacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaacta-tgaatataggcattcact 258  Q
     ||||||||||||||||| | |||  | || ||||||||||||| |||| |||||| ||||| |||||||| |||| |||| | ||||| |||||| |||    
T  21143103 gatataagtcctatttattgaacacaaaatatggtaagttacaaatacacgaagagtcataagactaagtgccatt-actacttaatattggcattaact 21143005  T
Q  259 ctaacgagttaaggaacatagaaa-ccttgtgaaatatggacatccacatcatattaatattattcataaca 329  Q
    || | ||||||| |||| |||||| || | |||||||||||||||||||||||||||||||||| |||||||    
T  21143004 cttaggagttaaagaacgtagaaagccatatgaaatatggacatccacatcatattaatattatacataaca 21142933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 25398337 - 25398215
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||| || ||||| ||||||| |||||||||||  |||||||| || ||||||||     
T  25398337 attgcaagatattgtacaccatagaaaagtagagagaaaaggataaagggagaacaagagagtatattgtattacttcacaagtgtg-tcattacattgt 25398239  T
Q  162 aatataagtcctatttataggaca 185  Q
    ||| || |||||||||||||||||    
T  25398238 aatgtaggtcctatttataggaca 25398215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 17275056 - 17275196
Alignment:
Q  76 tacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctat 175  Q
    |||||||||||| ||||||||||||   |||||| || ||||| |||| || ||||||| ||| ||||||||||||||||||| | ||| || |||||||    
T  17275056 tacaacatagaaaagtagagagaaaaatataaagggagaacaagagagcatattgtattgcttctcaagtgtgttctttacatggcaatgtaggtcctat 17275155  T
Q  176 ttataggacagacatgtggtaagttacaagtacatgaagag 216  Q
    ||||| || | | | || |||| |||||| |||||||||||    
T  17275156 ttatatgatacaaaagttgtaacttacaattacatgaagag 17275196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 329
Target Start/End: Complemental strand, 17190895 - 17190629
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||||||||||||||| || | |||||| || |  ||||||  | ||||||||||||| ||||||| ||| |||||||||  |||||||| |     
T  17190895 attgcaagatattgtacaacataaaaaaatagagaaaatg--ataaaggaagaacaaaagagtatattgtatttcttctcaagtgtgccctttacatggc 17190798  T
Q  162 aatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccat-aaactaagtgtcattaactatgaatataggcattcactct 260  Q
    ||| ||  ||||||||||||||   | | || |||| ||||||||| |||||||| |||   | ||| | ||| |||  ||||||| || |||| | ||     
T  17190797 aatgtagatcctatttataggatgcaaaagttgtaacttacaagtatatgaagagtcatgggattaaatatcaataagaatgaataaagtcatttagtca 17190698  T
Q  261 aacgagttaaggaacatagaaa-ccttgtgaaatatggacatccacatcatattaatattattcataaca 329  Q
     |  |||||||| | |||||||  || | |||| ||||||||||||||||||||||||||||||||||||    
T  17190697 tagtagttaagggatatagaaagtctagggaaa-atggacatccacatcatattaatattattcataaca 17190629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 19441097 - 19441210
Alignment:
Q  73 ttgtacaacatagaagagtagagagaaagggataaagagataacaaa-agagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtc 171  Q
    |||||||||||| || ||||||||||||  ||||||| || |||||| ||||||| || ||||||||  ||||||||| | ||| |||  |||||| |||    
T  19441097 ttgtacaacataaaaaagtagagagaaaatgataaagtgagaacaaagagagtatattatattacttcacaagtgtgtccgttatattacaatatatgtc 19441196  T
Q  172 ctatttataggaca 185  Q
    ||||||||||||||    
T  19441197 ctatttataggaca 19441210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 17270121 - 17270220
Alignment:
Q  76 tacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctat 175  Q
    ||||| |||||| ||||||||||||   |||||  || || || ||||||| ||||||| ||| ||||||||||||||||||| | ||| || |||||||    
T  17270121 tacaatatagaaaagtagagagaaaaatataaaaggagaaaaagagagtatattgtattgcttctcaagtgtgttctttacatggcaatgtaggtcctat 17270220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 62 - 322
Target Start/End: Complemental strand, 19084707 - 19084441
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataa--agagataacaaa-agagtatgttgtattacttatcaagtgtgttctttacat 158  Q
    |||||||||||||||||||||||||| ||||| ||||| |||| ||  ||||| |||||| |||||||  |||||| ||| ||||||||||||||||||     
T  19084707 attgcaagatattgtacaacatagaaaagtagggagaatgggagaacaagagagaacaaagagagtatagtgtattgcttctcaagtgtgttctttacaa 19084608  T
Q  159 tgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaatataggcattcac 257  Q
      |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||  ||| || ||||  ||||||||||||||||     
T  19084607 gcaaatataagtcctatttatatgacacaaatgtggtaagttacaagtacatgaagagccataagactgggtgccactaacattgaatataggcattcat 19084508  T
Q  258 tctaacgagtta-aggaacataga-aaccttgtgaaatatggacatccacatcatattaatattatt 322  Q
    ||  | |||||| ||||||||||| | ||||  | ||||||||||||||||||||| |||| |||||    
T  19084507 tcataggagttataggaacatagagagccttagggaatatggacatccacatcataataatcttatt 19084441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 129 - 331
Target Start/End: Complemental strand, 19089665 - 19089460
Alignment:
Q  129 tgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaa 227  Q
    |||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| |   |    
T  19089665 tgtattgcttctcaagtgcgttctttacattgaaatataagtcctatttatatgacacaaatgtggtaagttaaaagtacatgaagagtcataagatcga 19089566  T
Q  228 gtgtcattaactatgaatataggcattcactctaacgagtt-aaggaacataga-aaccttgtgaaatatggacatccacatcatattaatattattcat 325  Q
      | || ||||  |||||||||||||||| ||  | ||||| |||||||||||| |  ||| || ||||||||||||||||||||| |||||||||||||    
T  19089565 ccgccactaacattgaatataggcattcattcataggagttaaaggaacatagagagtcttatggaatatggacatccacatcataataatattattcat 19089466  T
Q  326 aacact 331  Q
    ||||||    
T  19089465 aacact 19089460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 25232222 - 25232099
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||| ||||| | ||||||| ||| ||||||||||||||||||||      
T  25232222 attgcaagataatgtacaacatagaagagtagagagaaaaggataaagggagaacaagagagtgtattgtattgcttctcaagtgtgttctttacattac 25232123  T
Q  162 aatataagtcctatttataggaca 185  Q
    |||||| ||||||||||| |||||    
T  25232122 aatatatgtcctatttatgggaca 25232099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 25225917 - 25225794
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||| || ||||||||||| | ||||||| ||| |||| |||||||||||||||      
T  25225917 attgcaagataatgtataacatagaagagtagagagaaaaggataaagggagaacaaaagagtgtattgtattgcttctcaactgtgttctttacattac 25225818  T
Q  162 aatataagtcctatttataggaca 185  Q
    |||| | |||||||||||||||||    
T  25225817 aatacatgtcctatttataggaca 25225794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 62 - 282
Target Start/End: Complemental strand, 23453758 - 23453533
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttg----tattacttatcaagtgtgttctttaca 157  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||| ||| |||||||  |||| |||    |||||||| | || |||||| |||| |    
T  23453758 attgtaagatattgtacaacatagaagagtagatagaaaggcataaaaagagaacaaaaatgtatattgtatatattacttcttaaatgtgttatttata 23453659  T
Q  158 ttgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaatataggcattca 256  Q
    | | |||||| ||||||||||||||||||| |  | |||| ||||||||||||||| || |||||  |||| ||||| |||| ||||||| || |||||     
T  23453658 tggcaatatatgtcctatttataggacagaaaatttgtaacttacaagtacatgaatagtcataaggctaaatgtcaataacaatgaataaagtcattcg 23453559  T
Q  257 ctctaacgagttaaggaacatagaaa 282  Q
    ||| || ||||||||| | |||||||    
T  23453558 ctcaaatgagttaagggatatagaaa 23453533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 16443218 - 16443376
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||  || ||||| ||||||| |||||||||||    |||||||  |||||||||     
T  16443218 attgcaagatattgtacaacatagaaaagtagagagaaaaggataaatggagaacaagagagtatattgtattacttcatgagtgtgtattttacattg- 16443316  T
Q  162 aatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccata 221  Q
     ||||| |||||||||||| |||| | || | |||||||||||||  |||||||| ||||    
T  16443317 catataggtcctatttataagacacaaatattgtaagttacaagtgtatgaagagtcata 16443376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 11312312 - 11312159
Alignment:
Q  67 aagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacat-tgaaata 165  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||| || |||||||  |||||||||||||||||||   ||||     
T  11312312 aagatattgtacaatatagaagagtagaga-aaagggataaagagagaacaagagagtatattatattactcttcaagtgtgttctttacatgacaaatg 11312214  T
Q  166 taagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccat 220  Q
    ||  |||||||||||||| | | | || |||  |||||| |||||||||||||||    
T  11312213 tagatcctatttataggatacaaaagttgtaccttacaattacatgaagagccat 11312159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 26195547 - 26195429
Alignment:
Q  66 caagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaata 165  Q
    |||||||||||||||||||||| |||| ||||||| |||||||| || ||||| ||||||| |||||||||||   ||||||| |  |||||||| ||||    
T  26195547 caagatattgtacaacatagaaaagtatagagaaaaggataaagggagaacaagagagtatattgtattacttcataagtgtgat-attacattgcaata 26195449  T
Q  166 taagtcctatttataggaca 185  Q
    || |||||||||||||||||    
T  26195448 taggtcctatttataggaca 26195429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 17830694 - 17830749
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataaca 117  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17830694 attgtaagatattgtacaacatagaagagtagagagaaacggataaagagataaca 17830749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 18557478 - 18557598
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||| ||||||||||||||  |||||||||||||||||| ||||||||||| ||| |||||| ||| |||||||||| |||||||   ||||||||||      
T  18557478 attgtaagatattgtacaatgtagaagagtagagagaaa-ggataaagagagaac-aaagagaatgatgtattacttctcaagtg-aatctttacattac 18557574  T
Q  162 aatataagtcctatttataggaca 185  Q
    | |||| ||| |||||||||||||    
T  18557575 attataggtcatatttataggaca 18557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 158
Target Start/End: Original strand, 44117324 - 44117422
Alignment:
Q  63 ttgcaagatattgtacaa---catagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacat 158  Q
    ||||||||||||||||||   |||||||||||||||||||| |||||||| || || || | ||||| || ||||| || ||||||||||| |||||||    
T  44117324 ttgcaagatattgtacaacaacatagaagagtagagagaaatggataaagggagaataagatagtatattttattatttttcaagtgtgttatttacat 44117422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 26538859 - 26538928
Alignment:
Q  264 gagttaaggaacatagaaaccttgtgaaatatggacatccacatcatattaatattattcataacacttc 333  Q
    ||||||||||| ||||||| | |  | ||||||||||| || |||||| |||||||||||||||||||||    
T  26538859 gagttaaggaatatagaaaacctaggtaatatggacattcatatcataataatattattcataacacttc 26538928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 17843167 - 17843068
Alignment:
Q  223 actaagtgtcattaactatgaatataggcattcactctaacgagttaaggaacatagaaaccttgtgaaatatggacatccacatcatattaatattatt 322  Q
    |||||||| || |||| ||||||| || |||||| ||  | |||||||| |||||||||| |||  | || ||||||||| ||||||||||| |||||||    
T  17843167 actaagtggcaataacaatgaatagagacattcattcataggagttaagaaacatagaaagctttaggaaaatggacatctacatcatattattattatt 17843068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 220
Target Start/End: Original strand, 7384774 - 7384907
Alignment:
Q  86 aagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttataggaca 185  Q
    |||| |||||||||||  ||||||||| || | |||||||| ||||||| ||| |||||| || |||||| || | ||| || ||||||||||||| | |    
T  7384774 aagaatagagagaaagaaataaagagagaatataagagtatattgtattgcttctcaagtatg-tctttatatggtaatgtaggtcctatttatagaata 7384872  T
Q  186 gacatgtggtaagttacaagtacatgaagagccat 220  Q
     | | || |||| || ||| |||||||||||||||    
T  7384873 caaaagttgtaactttcaattacatgaagagccat 7384907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 34226054 - 34226189
Alignment:
Q  141 caagtgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaact 239  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| | |||||| ||||||||||| ||||     
T  34226054 caagtgtgttatttacattgaaatataagtcctatttataggacacaaatatggtaagttacaagtacatgaaaaaccataagactaagtgtcaataaca 34226153  T
Q  240 atgaatataggcattcactctaacgagttaaggaac 275  Q
    ||||||||||||||||||||  | ||||||||||||    
T  34226154 atgaatataggcattcactcataggagttaaggaac 34226189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 141 - 275
Target Start/End: Original strand, 34230182 - 34230317
Alignment:
Q  141 caagtgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaact 239  Q
    |||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| | |||||| ||||||||||| ||||     
T  34230182 caagtgtgttatttacattgaaatataagtcctatttataggacacaaatatggtaagttacaagtacatgaaaaaccataagactaagtgtcaataaca 34230281  T
Q  240 atgaatataggcattcactctaacgagttaaggaac 275  Q
    ||||||||||||||||||||  | ||||||||||||    
T  34230282 atgaatataggcattcactcataggagttaaggaac 34230317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 331
Target Start/End: Complemental strand, 20362806 - 20362648
Alignment:
Q  174 atttataggacagacatgtggtaagttacaagtacatgaagagccata-aactaagtgtcattaactatgaatataggcattcactctaacgagttaagg 272  Q
    |||||||||||| | |||||||||||||||| |||||||||| |||||  ||||| || || |||| | ||||||||||||| |||   | |||||||||    
T  20362806 atttataggacacaaatgtggtaagttacaattacatgaagaaccatatgactaattgccaataacaacgaatataggcatttactagtaggagttaagg 20362707  T
Q  273 aacatagaaa-ccttgtgaaatatggacatccacatcatattaatattattcataacact 331  Q
    |||||||||| ||||  | || ||||||||||||||||||||| ||| ||||||||||||    
T  20362706 aacatagaaagccttagggaa-atggacatccacatcatattattatcattcataacact 20362648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 20125438 - 20125318
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||||||||||||||||||| || | |||||||||| |||||||  || ||||| || |||| |||||||||||  |||||||| || ||||||||     
T  20125438 attgcaagatattgtacaacatataaaattagagagaaaaggataaatggagaacaagagggtatattgtattacttcacaagtgtg-tcattacattgc 20125340  T
Q  162 aatataagtcctatttatagga 183  Q
    |||||| |||||||||||||||    
T  20125339 aatatatgtcctatttatagga 20125318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 183
Target Start/End: Complemental strand, 7578761 - 7578641
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||| |||||||||||||||||| ||||||||||| ||| | |||||||||||   ||| ||||||||||||| ||| ||||||||| |||||| | |      
T  7578761 attgtaagatattgtacaacatataagagtagagataaaagtataaagagatagtgaaaaagtatgttgtattgcttctcaagtgtg-tctttatactat 7578663  T
Q  162 aatataagtcctatttatagga 183  Q
    ||||| ||||||||||||||||    
T  7578662 aatatgagtcctatttatagga 7578641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 42940003 - 42939882
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||| |  ||| |||| |||||||||| |||||||| || ||||| || |||| |||||||||||  |||||||| || ||||||||     
T  42940003 attgcaagatattgtaaagtatataagaatagagagaaa-ggataaagggagaacaagagggtatattgtattacttcacaagtgtg-tcattacattgt 42939906  T
Q  162 aatataagtcctatttataggaca 185  Q
    ||| || ||| |||||||||||||    
T  42939905 aatgtaggtcttatttataggaca 42939882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 42937702 - 42937582
Alignment:
Q  63 ttgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaa 162  Q
    ||||||||||||||| |  ||| |||| |||||||||| ||||||||  | ||||| ||||||| |||||||||||   ||||||| || |||||||| |    
T  42937702 ttgcaagatattgtaaagtatataagaatagagagaaa-ggataaaggaagaacaagagagtatattgtattacttcaaaagtgtg-tcattacattgta 42937605  T
Q  163 atataagtcctatttataggaca 185  Q
    || |  |||||||||||||||||    
T  42937604 atgttggtcctatttataggaca 42937582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 3590565 - 3590596
Alignment:
Q  294 atggacatccacatcatattaatattattcat 325  Q
    ||||||||||||||||||||||||||||||||    
T  3590565 atggacatccacatcatattaatattattcat 3590596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 23818659 - 23818760
Alignment:
Q  82 atagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttatag 181  Q
    |||||| ||||||||||||| || |||| || || || | ||||| |||| ||||||  ||||||||| |||||||||  ||  | ||||||||||||||    
T  23818659 atagaatagtagagagaaagagaaaaagggagaagaagaaagtatattgttttacttcacaagtgtgtactttacattacaacttgagtcctatttatag 23818758  T
Q  182 ga 183  Q
    ||    
T  23818759 ga 23818760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 29332871 - 29332807
Alignment:
Q  145 tgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacat 210  Q
    |||||| ||||||||| |||||||||| ||||||||| | | | ||| ||||||||||||||||||    
T  29332871 tgtgttatttacattgcaatataagtcgtatttatagaataaa-atgaggtaagttacaagtacat 29332807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 35338915 - 35339036
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||| |  ||| |||| |||||  ||||||||||||||| || || | ||||| |||||||  ||  ||||||| ||||||||||       
T  35338915 attgcaagatattgtaaagtatataagaatagagttaaagggataaagagagaataagatagtatattgtattctttcacaagtgtattctttacatgac 35339014  T
Q  162 aatataagtcctatttatagga 183  Q
    ||| ||  ||||||||||||||    
T  35339015 aatgtagatcctatttatagga 35339036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 37479581 - 37479617
Alignment:
Q  149 ttctttacattgaaatataagtcctatttataggaca 185  Q
    |||||||||||| |||||| |||||||||||||||||    
T  37479581 ttctttacattgcaatataggtcctatttataggaca 37479617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 20463075 - 20463193
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||      
T  20463075 attgcaaaatattgtacaacatagaagagtagag-gaaagggataaagagataacaaaagagtatgatgtattgcttctcaagtgtgttctttacattac 20463173  T
Q  162 aatataagtcctatttatag 181  Q
    |||||| || ||||||||||    
T  20463174 aatataggttctatttatag 20463193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 10937507 - 10937385
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||| |||||||| |||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||| |||||||||||     
T  10937507 attgtaagatattttacaacgtaaaagagttgagagaaagggataaatagataacaaaagagtatgttgtattgcttctcaaatgtg-tctttacattgc 10937409  T
Q  162 aatataagtcctatttataggaca 185  Q
    ||||||  ||||||||||||||||    
T  10937408 aatatagatcctatttataggaca 10937385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 27544700 - 27544627
Alignment:
Q  70 atattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaa 143  Q
    |||||||| || ||||||  ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  27544700 atattgtataatatagaaatgtagagagaaagggatacagagataacaaaagagtatgttatattacttctcaa 27544627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 27547433 - 27547329
Alignment:
Q  70 atattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataag 169  Q
    ||||||||||||||||||||||||||| || |        ||||||||||||||||||||||||||||| |||||||   |||||||||  ||| || ||    
T  27547433 atattgtacaacatagaagagtagagaaaacg--------agataacaaaagagtatgttgtattacttctcaagtg-catctttacatcaaaacatgag 27547343  T
Q  170 tcctatttatagga 183  Q
    ||||||||||||||    
T  27547342 tcctatttatagga 27547329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 7117276 - 7117312
Alignment:
Q  294 atggacatccacatcatattaatattattcataacac 330  Q
    |||||||||||||||||||||||||||||||||||||    
T  7117276 atggacatccacatcatattaatattattcataacac 7117312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 20458771 - 20458829
Alignment:
Q  124 tatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttatagg 182  Q
    ||||||||||| ||| ||||||||||||||||||||  |||||| || |||||||||||    
T  20458771 tatgttgtattgcttctcaagtgtgttctttacattacaatataggttctatttatagg 20458829  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 19647500 - 19647423
Alignment:
Q  82 atagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacatt 159  Q
    |||||||||||||||||||| ||||||| || || |||||||||| |   |||||||  ||||||||| |||||||||    
T  19647500 atagaagagtagagagaaagagataaagggagaagaaaagagtatatatcattacttcacaagtgtgtcctttacatt 19647423  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 3170085 - 3170184
Alignment:
Q  82 atagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatataagtcctatttatag 181  Q
    |||||||||||||||||||| ||||||| || || || ||||||| ||| |||||||   ||||||||| ||||||||  ||  | ||||||||||||||    
T  3170085 atagaagagtagagagaaagagataaagggagaagaagagagtatattgcattactt-caaagtgtgttttttacattacaacttgagtcctatttatag 3170183  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 37710120 - 37710086
Alignment:
Q  22 taacttctaagcatttcttaagattggtttatttc 56  Q
    |||||||||||||||||| ||||||||||||||||    
T  37710120 taacttctaagcatttctcaagattggtttatttc 37710086  T

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Target: scaffold0496 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 159 - 282
Target Start/End: Original strand, 9103 - 9229
Alignment:
Q  159 tgaaatataagtcctatttatagga--cagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaatataggcattc 255  Q
    |||||||||||||||||||||||||  || | |||||||||||||||| ||||||||||||||||| |||||||  || |||| ||||||||| ||||||    
T  9103 tgaaatataagtcctatttataggagacatatatgtggtaagttacaaatacatgaagagccataagactaagttccaataacaatgaatatatgcattc 9202  T
Q  256 actctaacgagttaaggaacatagaaa 282  Q
    ||||  | |||||||||||||||||||    
T  9203 actcataggagttaaggaacatagaaa 9229  T

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Target: scaffold0184 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 329
Target Start/End: Original strand, 10798 - 10980
Alignment:
Q  152 tttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccataa-actaagtgtcattaactatgaa-tatag 249  Q
    ||||| ||| |||||| ||| ||||||||||| | | ||||||||||||||||||||||||| | |||||| |||||| | || |||| ||||| |||||    
T  10798 tttactttgcaatatatgtcatatttataggatacaaatgtggtaagttacaagtacatgaaaaaccataagactaagagccaataacaatgaattatag 10897  T
Q  250 gcattcactctaacgagttaaggaacatagaaa-ccttgtga--aatatggacatccacatcatattaatattattcataaca 329  Q
     |||||||||  | ||||||| ||||||| |||  |||  ||  || |||||||||||||||| |||||||||||||||||||    
T  10898 acattcactcatatgagttaatgaacataaaaagtcttaggacgaaaatggacatccacatcacattaatattattcataaca 10980  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 20679210 - 20679319
Alignment:
Q  68 agatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattgaaatata 167  Q
    ||||| |||||||||||||| |||||||| |||   ||||| ||||||||||||||||| || |||||||| |||||||| ||||||||| |  ||||||    
T  20679210 agatactgtacaacatagaatagtagagaaaaaa--ataaaaagataacaaaagagtatattatattacttctcaagtgtcttctttaca-tacaatata 20679306  T
Q  168 agtcctatttata 180  Q
     ||||||||||||    
T  20679307 tgtcctatttata 20679319  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 413
Target Start/End: Complemental strand, 16006841 - 16006773
Alignment:
Q  345 atagatcaaaatctataaaatgtttggaacgaccctacctaaccaatttcaattttcttgattctaata 413  Q
    ||||||||||| ||||||||||| |||||||||||| |||||| |||| |||||||||| ||| |||||    
T  16006841 atagatcaaaacctataaaatgtatggaacgaccctgcctaacaaattccaattttcttaattataata 16006773  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 185
Target Start/End: Original strand, 8563660 - 8563782
Alignment:
Q  62 attgcaagatattgtacaacatagaagagtagagagaaagggataaagagataacaaaagagtatgttgtattacttatcaagtgtgttctttacattga 161  Q
    |||||||||||||||| || ||| |||| || ||||||||| ||||||||| || |  | || || || |||||||||  ||||||| || ||||||||     
T  8563660 attgcaagatattgtaaaatatataagaatacagagaaaggaataaagagagaatattatagcatattttattacttaataagtgtg-tcattacattgt 8563758  T
Q  162 aatataagtcctatttataggaca 185  Q
    |||||| || ||||||||||||||    
T  8563759 aatataggttctatttataggaca 8563782  T

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Target: scaffold0248 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 16263 - 16187
Alignment:
Q  144 gtgtgttctttacattgaaatataagtcctatttataggacagacatgtggtaagttacaagtacatgaagagccat 220  Q
    ||||||||||||||| | ||| || ||||||||||||||| | | | || |||| |||||| |||||||||||||||    
T  16263 gtgtgttctttacatggcaatgtaggtcctatttataggatacaaaagttgtaacttacaattacatgaagagccat 16187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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