View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_17 (Length: 403)
Name: NF2722_low_17
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 19 - 392
Target Start/End: Complemental strand, 42980336 - 42979963
Alignment:
| Q |
19 |
tatgcttcctatatatcatgaacttatcaatgctggtctccggatatgggtattcaggtaccgaccttaaccaagatacatatatctcaacacttatgaa |
118 |
Q |
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| T |
42980336 |
tatgcttcctatatatcatgaacttatcaatgctggtctccggatatgggtattcaggtaccgaccttaaccaagatacatatatctcaacacttatgaa |
42980237 |
T |
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| Q |
119 |
aataattcaacagttgacatctcaatacatccatggacagtatgtgatatcaacttttggttgattgacatgtcttacattatcctctaatgtatattcc |
218 |
Q |
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| T |
42980236 |
aataattcaacagttgacatctcaatacatccatggacagtatgtgatatcaacttttggttgattgacatgtcttacattatcctctaatgtatattgc |
42980137 |
T |
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| Q |
219 |
ctactttgatagagtcaaatctcatcatttttgttgtgtttatttcttaattcttgaacagtatatctttatttcaacttttcaagcactgtgccaaaat |
318 |
Q |
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| T |
42980136 |
ctactttgatagagtcaaatctcatcacttttgttgtgtttatttcttaattcttgaacagtatatctttatttcaacttttcaagcactgtgccaaaat |
42980037 |
T |
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| Q |
319 |
aaagtaaaaaatatctttgttccttaatcatttgagtatcacttatcacgttttaacaatcccatccatttcat |
392 |
Q |
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| T |
42980036 |
aaagtaaaaaatatctttgttccttaatcatttgagtatcacttatcacgttttaacaatcccatccatttcat |
42979963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 42973901 - 42973840
Alignment:
| Q |
19 |
tatgcttcctatatatcatgaacttatcaatgctggtctccggatatgggtattcaggtacc |
80 |
Q |
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|||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||| |
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| T |
42973901 |
tatgcttcctatatatcaagaacttattaatgctgatctccggatatgggtatacaggtacc |
42973840 |
T |
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