View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_18 (Length: 388)
Name: NF2722_low_18
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 222 - 381
Target Start/End: Complemental strand, 47798044 - 47797885
Alignment:
| Q |
222 |
cgcacaaaattaatattaaatttcgacataacacactcggaattggacattttgattgtaacctactgctgggcagtatccaaactcattacacataaca |
321 |
Q |
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| T |
47798044 |
cgcacaaaattaatattaaatttcgacataacacactcggaattggacattttgattgtaacctactgctgggcagtatccaaactcattacacataaca |
47797945 |
T |
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| Q |
322 |
atgcaaaactaataacaataaaccttcaaattttttcaattctacacaagagcctatgct |
381 |
Q |
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| T |
47797944 |
atgcaaaactaataacaataaaccttcaaattttttcaattctacacaagagcctatgct |
47797885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 47798163 - 47798099
Alignment:
| Q |
103 |
attataatgctttattcacagaaatctctgagaggtttggtaagtctctttactaaagaaggaaa |
167 |
Q |
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| T |
47798163 |
attataatgctttattcacaaaaatctctgagaggtttggtaagtccctttactaaagaaggaaa |
47798099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 47798229 - 47798162
Alignment:
| Q |
1 |
gattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagtcctaattgcaatgat |
68 |
Q |
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| T |
47798229 |
gattggtgggctgaagatctaactgttcttagaattgtctttttccaaagagttctaattgcaatgat |
47798162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 39777909 - 39778075
Alignment:
| Q |
1 |
gattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagtcctaattgcaatgatggctagagggtttaaaaattgtggtattggtc |
100 |
Q |
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| T |
39777909 |
gattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagttctaattgcaatgatggctagagggtttaaaaattgtggtattggtc |
39778008 |
T |
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| Q |
101 |
ctattataatgctttattcacagaaatctctgagaggtttggtaagtctctttactaaagaaggaaa |
167 |
Q |
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| T |
39778009 |
ctattataatgctttattcacagaaatctctgagaggtttggtaagtccctttactaaagaaggaaa |
39778075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 5677502 - 5677360
Alignment:
| Q |
1 |
gattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagtcctaattgcaatgatggctagagggtttaaaaattgtggtattggtc |
100 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| |||| |||||||| ||||| |||||||||||||||||||||||| | | || |||||||| |
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| T |
5677502 |
gattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttgctattggtc |
5677403 |
T |
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| Q |
101 |
ctattataatgctttattcacagaaatctctgagaggtttggt |
143 |
Q |
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| T |
5677402 |
ctattctaatgctctatgcacagaaatctctacgaggtttggt |
5677360 |
T |
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