View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_low_20 (Length: 385)

Name: NF2722_low_20
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_low_20
NF2722_low_20
[»] chr4 (14 HSPs)
chr4 (3-371)||(55092098-55092472)
chr4 (303-370)||(37624674-37624741)
chr4 (305-370)||(21864357-21864422)
chr4 (305-370)||(21920218-21920283)
chr4 (302-366)||(4505458-4505522)
chr4 (302-366)||(7905967-7906031)
chr4 (302-366)||(25231297-25231361)
chr4 (306-366)||(36558264-36558324)
chr4 (302-366)||(51733465-51733529)
chr4 (302-365)||(22220330-22220393)
chr4 (302-365)||(52915513-52915576)
chr4 (304-369)||(28308845-28308910)
chr4 (290-324)||(30106410-30106444)
chr4 (305-366)||(43337721-43337782)
[»] chr1 (15 HSPs)
chr1 (302-366)||(14593310-14593374)
chr1 (304-370)||(30293454-30293520)
chr1 (302-365)||(52023938-52024001)
chr1 (270-366)||(50249432-50249529)
chr1 (302-366)||(12591047-12591111)
chr1 (302-370)||(44257646-44257714)
chr1 (302-365)||(34047198-34047261)
chr1 (302-366)||(14373378-14373442)
chr1 (302-366)||(34032045-34032109)
chr1 (302-364)||(26352046-26352108)
chr1 (302-366)||(27721080-27721144)
chr1 (302-366)||(27721195-27721259)
chr1 (270-366)||(8565886-8565981)
chr1 (302-364)||(12484593-12484655)
chr1 (302-370)||(39125721-39125789)
[»] chr8 (8 HSPs)
chr8 (302-366)||(396181-396245)
chr8 (302-366)||(15160413-15160477)
chr8 (302-370)||(17656025-17656093)
chr8 (302-366)||(39765827-39765891)
chr8 (302-366)||(37559500-37559564)
chr8 (304-366)||(40362557-40362619)
chr8 (270-370)||(12339842-12339941)
chr8 (312-366)||(43724504-43724558)
[»] chr7 (16 HSPs)
chr7 (302-366)||(31883906-31883970)
chr7 (302-366)||(2297165-2297229)
chr7 (302-366)||(6747348-6747412)
chr7 (302-366)||(12977651-12977715)
chr7 (302-366)||(12983109-12983173)
chr7 (302-366)||(18270700-18270764)
chr7 (302-366)||(18292457-18292521)
chr7 (302-366)||(37502441-37502505)
chr7 (304-365)||(715830-715891)
chr7 (274-366)||(42286030-42286123)
chr7 (302-365)||(25440995-25441058)
chr7 (302-366)||(44567007-44567070)
chr7 (303-366)||(34274916-34274979)
chr7 (303-370)||(47187780-47187847)
chr7 (304-366)||(31929826-31929889)
chr7 (336-366)||(40927282-40927312)
[»] chr3 (8 HSPs)
chr3 (270-365)||(44064386-44064482)
chr3 (302-366)||(50038136-50038199)
chr3 (302-365)||(42571493-42571556)
chr3 (302-366)||(19115508-19115572)
chr3 (306-366)||(3985983-3986043)
chr3 (302-366)||(4759412-4759476)
chr3 (302-366)||(42886871-42886935)
chr3 (305-366)||(45460788-45460849)
[»] chr6 (4 HSPs)
chr6 (270-366)||(32429409-32429506)
chr6 (302-366)||(4850462-4850526)
chr6 (302-370)||(29400063-29400131)
chr6 (302-366)||(19689452-19689516)
[»] chr5 (8 HSPs)
chr5 (302-366)||(43584343-43584407)
chr5 (302-365)||(10344899-10344962)
chr5 (306-366)||(7317150-7317210)
chr5 (302-366)||(32158664-32158728)
chr5 (302-366)||(25362767-25362831)
chr5 (312-366)||(35765877-35765931)
chr5 (306-366)||(3024902-3024962)
chr5 (336-370)||(40776576-40776610)
[»] chr2 (11 HSPs)
chr2 (302-366)||(5717634-5717698)
chr2 (302-366)||(32022867-32022931)
chr2 (302-370)||(45423736-45423804)
chr2 (302-365)||(27986161-27986224)
chr2 (302-365)||(28072693-28072756)
chr2 (305-366)||(16792608-16792669)
chr2 (302-365)||(43427255-43427317)
chr2 (312-366)||(35799324-35799378)
chr2 (302-366)||(14286053-14286116)
chr2 (302-366)||(22620301-22620365)
chr2 (302-366)||(17695792-17695856)
[»] scaffold0332 (1 HSPs)
scaffold0332 (302-365)||(3777-3840)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 55092098 - 55092472
Alignment:
Q  3 aaacgacagaggaagacgacgatggcaacttcttcgtcgcgttttggtaaggagaatgagtctgctgtggatatgcagaattcatcgttttcgcgtttga 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  55092098 aaacgacagaggaagacgacgatgacaacttcttcgtcgcgttttggtaaggagaatgtgtctgctgtggatatgcagaattcatcgttttcgcgtttga 55092197  T
Q  103 aggattctttgaaggatgtatgtagcttcgatgattttaagctgcggatgagagtttatttgagtctcggaacttgtgaagatattttccatgtcatgaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55092198 aggattctttgaaggatgtatgtagcttcgatgattttaagcagcggatgagtgtttatttgagtctcggaacttgtgaagatattttccatgtcatgaa 55092297  T
Q  203 tcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaattatcgtgtactc------tttcaaaatgaatgttgttcaggtttc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||    
T  55092298 tcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaattatcgtgtactctatctgtttcaaaatgaatgttgttcaggtttc 55092397  T
Q  297 tagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattata 371  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  55092398 tagagacatattaagaaatgcaatgatgaacaaatagataatgattattttaccaaattatccttattaattata 55092472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 37624741 - 37624674
Alignment:
Q  303 catattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    ||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||    
T  37624741 catattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaattat 37624674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 21864357 - 21864422
Alignment:
Q  305 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||||||    
T  21864357 tattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaattat 21864422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 370
Target Start/End: Original strand, 21920218 - 21920283
Alignment:
Q  305 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||||||    
T  21920218 tattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaattat 21920283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 4505522 - 4505458
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  4505522 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 4505458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 7905967 - 7906031
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  7905967 acatattaagaaatgcaatgattaaaagaaagagaattgttattttaccaaattatccttattaa 7906031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 25231361 - 25231297
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||| ||||||||| |||||||    
T  25231361 acatattaagaaatgcaatgattaaaagaaagagaatgattattttatcaaattatctttattaa 25231297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 36558264 - 36558324
Alignment:
Q  306 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||| |||| | |||||||  ||||||||||||||||||||||||||    
T  36558264 attaagaaatgcaatgattaaaagaaagataatttttattttaccaaattatccttattaa 36558324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 51733465 - 51733529
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||| ||||||||    
T  51733465 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattattcttattaa 51733529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 22220330 - 22220393
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||||||||||| |||| |  || |||| |||||||||||||||||||||||||    
T  22220330 acatattaagaaatgcaatgattaaaagaatgagaatggttattttaccaaattatccttatta 22220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 52915513 - 52915576
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||| ||||||| |||| | ||| ||||||||||||||||||||||| ||||||    
T  52915513 acatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatctttatta 52915576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Complemental strand, 28308910 - 28308845
Alignment:
Q  304 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaatta 369  Q
    |||||||||||||||||||| |||| | ||||||  ||||||||| |||||||| |||||||||||    
T  28308910 atattaagaaatgcaatgattaaaagaaagataaatattattttatcaaattattcttattaatta 28308845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 30106444 - 30106410
Alignment:
Q  290 aggtttctagagacatattaagaaatgcaatgatg 324  Q
    ||||||||||| |||||||||||||||||||||||    
T  30106444 aggtttctagacacatattaagaaatgcaatgatg 30106410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 43337721 - 43337782
Alignment:
Q  305 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||| |||||| ||||||| |||| | ||| ||||||||||||| ||||||||| |||||||    
T  43337721 tattgagaaatacaatgattaaaagaaagagaatgattattttatcaaattatctttattaa 43337782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 14593310 - 14593374
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  14593310 acatattaagaaatgcaatgattaaaaaaaagataatggttattttaccaaattatccttattaa 14593374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 370
Target Start/End: Complemental strand, 30293520 - 30293454
Alignment:
Q  304 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    |||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||||||    
T  30293520 atattaagaaatgcaatgattaaaagaaagataatggttattttaccaaattatccttattaattat 30293454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 52023938 - 52024001
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  52023938 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttatta 52024001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 50249529 - 50249432
Alignment:
Q  270 tttcaaaatgaatgttgttc-aggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||| |||||||  |||| | || | |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  50249529 tttcaaaatgagtgttgttttaggtctttacacacatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 50249432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 12591047 - 12591111
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||| |||||| |||||||||| |||| | |||||||||||||||||||||||||||||||||||    
T  12591047 acatgttaagatatgcaatgattaaaagaaagataatgattattttaccaaattatccttattaa 12591111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 370
Target Start/End: Original strand, 44257646 - 44257714
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    ||||||||| |||||||||||| |||| | ||| ||| |||||||||||||||||||||||||||||||    
T  44257646 acatattaataaatgcaatgattaaaagaaagagaataattattttaccaaattatccttattaattat 44257714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 34047198 - 34047261
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||| ||||||    
T  34047198 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatcattatta 34047261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 14373378 - 14373442
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | | | |||| ||||||||||||||||||||||||||    
T  14373378 acatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaa 14373442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 34032045 - 34032109
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||| |||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  34032045 acatattaaaaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 34032109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 26352046 - 26352108
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatt 364  Q
    ||||||||||||||||||| || |||| | ||| |||| ||||||||||||||||||||||||    
T  26352046 acatattaagaaatgcaattattaaaagaaagagaatgtttattttaccaaattatccttatt 26352108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 27721144 - 27721080
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||| |||||||||||| |||| | ||  ||||||||||||| |||||||||||||||||    
T  27721144 acatattaaaaaatgcaatgattaaaagaaagtgaatgattattttatcaaattatccttattaa 27721080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 27721259 - 27721195
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||| ||||||||| || |||| | ||| ||||||||||||| |||||||||||||||||    
T  27721259 acatattaaaaaatgcaataattaaaagaaagagaatgattattttatcaaattatccttattaa 27721195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 8565981 - 8565886
Alignment:
Q  270 tttcaaaatgaatgttgttcaggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||||| ||| |||||| || | ||||||||||||||||||| |  | || | |||||||  | ||||||||||||||| ||||||||    
T  8565981 tttcaaaatgaatgtcgttaaggtttttacacacatattaagaaatgcaataaatagaaga-agataatagtaattttaccaaattattcttattaa 8565886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 364
Target Start/End: Original strand, 12484593 - 12484655
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatt 364  Q
    |||||||||||||| ||| ||| |||| | |||||||  | ||||||||||||||||||||||    
T  12484593 acatattaagaaatacaaagattaaaagaaagataattgtcattttaccaaattatccttatt 12484655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 39125789 - 39125721
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    |||||||||||||||||||||| |||| | ||| |||  ||||||| | ||||||||| | ||||||||    
T  39125789 acatattaagaaatgcaatgattaaaagaaagagaattgttatttttctaaattatccattttaattat 39125721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 396181 - 396245
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  396181 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 396245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 15160413 - 15160477
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  15160413 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 15160477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 17656093 - 17656025
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    ||||||||||||||| |||||| || | | | |||||||||||||||||||||||||||||||| ||||    
T  17656093 acatattaagaaatgtaatgattaagagaaaaataatgattattttaccaaattatccttattagttat 17656025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 39765827 - 39765891
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||| ||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  39765827 acatattaagaaatacaatgattaaaagaaagagaatgcttattttaccaaattatccttattaa 39765891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 37559500 - 37559564
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||  |||||| ||||||||    
T  37559500 acatattaagaaatgcaatgattaaaataaagagaatgattattttacataattattcttattaa 37559564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 40362619 - 40362557
Alignment:
Q  304 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||| | | |||| ||| |||| |||||||||||||||||| |||||||    
T  40362619 atattaagaaatgcaatgcttagaaaaaagagaatgcttattttaccaaattatctttattaa 40362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 12339941 - 12339842
Alignment:
Q  270 tttcaaaatgaatgttgttca-ggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaatt 368  Q
    ||||||||||||||| ||| | ||||| || | ||||||||||||||||||||||   |||| ||| |||  ||||||||| ||||||| |||||| |||    
T  12339941 tttcaaaatgaatgtcgtttaaggtttttacacacatattaagaaatgcaatgat--taaaagagagaattgttattttacaaaattattcttattgatt 12339844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 43724558 - 43724504
Alignment:
Q  312 aaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||||  |||||||    
T  43724558 aaatgcaatgattaaaagaaagagaatgattattttaccaaattatttttattaa 43724504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 31883970 - 31883906
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  31883970 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 31883906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 2297229 - 2297165
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  2297229 acatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaa 2297165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 6747412 - 6747348
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  6747412 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 6747348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 12977651 - 12977715
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  12977651 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 12977715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 12983109 - 12983173
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  12983109 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 12983173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 18270764 - 18270700
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | | | |||||||||||||||||||||||||||||||    
T  18270764 acatattaagaaatgcaatgattaaaagaaatagaatgattattttaccaaattatccttattaa 18270700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 18292521 - 18292457
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  18292521 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 18292457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 37502505 - 37502441
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  37502505 acatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 37502441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 365
Target Start/End: Original strand, 715830 - 715891
Alignment:
Q  304 atattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||||||||| |||| | ||| ||| ||||||||||||||||||||||||||    
T  715830 atattaagaaatgcaatgattaaaagaaagaaaatcattattttaccaaattatccttatta 715891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 366
Target Start/End: Complemental strand, 42286123 - 42286030
Alignment:
Q  274 aaaatgaatgttgttca-ggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||| ||| | ||||| || | |||||||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  42286123 aaaatgaatgtcgtttaaggtttttacaaacatattaagaaatgcaatgattaaaataaagagaattgttattttaccaaattatccttattaa 42286030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 25441058 - 25440995
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    ||||||||||||||| |||||| |||| | ||| |||||||||||||| |||||||||||||||    
T  25441058 acatattaagaaatgtaatgattaaaagaaagagaatgattattttactaaattatccttatta 25440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 44567007 - 44567070
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||||||||| || |||||| | | ||||||||||||| |||||||||||||||||    
T  44567007 acatattaagaaatgcaataattaaaaaaaa-agaatgattattttatcaaattatccttattaa 44567070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 34274979 - 34274916
Alignment:
Q  303 catattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||| ||||||| |||| | ||| |||| |||||||||||||||||| |||||||    
T  34274979 catattaagaaatacaatgattaaaagaaagagaatggttattttaccaaattatctttattaa 34274916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 370
Target Start/End: Complemental strand, 47187847 - 47187780
Alignment:
Q  303 catattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    |||||||| ||||||| |||| |||| | ||| |||  ||||||||||||||||||||||||||||||    
T  47187847 catattaaaaaatgcattgattaaaagaaagagaattgttattttaccaaattatccttattaattat 47187780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 31929826 - 31929889
Alignment:
Q  304 atattaagaaatgcaatgatgaaaaaatagataatgattattttacc-aaattatccttattaa 366  Q
    |||||||||||||||||||| || | | ||| |||| |||||||||| ||||||||||||||||    
T  31929826 atattaagaaatgcaatgattaacagaaagagaatgtttattttaccaaaattatccttattaa 31929889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 366
Target Start/End: Complemental strand, 40927312 - 40927282
Alignment:
Q  336 aatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||||||||||||    
T  40927312 aatgattattttaccaaattatccttattaa 40927282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 270 - 365
Target Start/End: Original strand, 44064386 - 44064482
Alignment:
Q  270 tttcaaaatgaatgt-tgttcaggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    ||||||||||| ||| | || |||||| || | |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  44064386 tttcaaaatgagtgtctttttaggtttttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttatta 44064482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 50038136 - 50038199
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  50038136 acatattaagaaatgcaatgattaaaaga-agagaatgattattttaccaaattatccttattaa 50038199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 42571493 - 42571556
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||||||||||| |||| ||||| |||| |||||||| ||||||||||||||||    
T  42571493 acatattaagaaatgcaatgattaaaagatagagaatggttattttatcaaattatccttatta 42571556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 19115572 - 19115508
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | | | |||| ||||||||||||||||||||||||||    
T  19115572 acatattaagaaatgcaatgattaaaagaaaaagaatggttattttaccaaattatccttattaa 19115508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 3986043 - 3985983
Alignment:
Q  306 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  3986043 attaagaaatgcaatgattaaaagaaagagaatttttattttaccaaattatccttattaa 3985983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 4759476 - 4759412
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||| |||||||| |||| | ||  |||| ||||||||||||||||||||||||||    
T  4759476 acatattaagaaaagcaatgattaaaagaaagcgaatggttattttaccaaattatccttattaa 4759412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 42886935 - 42886871
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||| ||||||||| |||| | ||| |||  ||||||||||||||||||||||||||    
T  42886935 acatattaagaactgcaatgattaaaagaaagagaattgttattttaccaaattatccttattaa 42886871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 45460849 - 45460788
Alignment:
Q  305 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||||| ||| |||| | | | |||  ||||||||||||||||||||||||||    
T  45460849 tattaagaaatgcaaagattaaaagaaataaaattgttattttaccaaattatccttattaa 45460788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 366
Target Start/End: Complemental strand, 32429506 - 32429409
Alignment:
Q  270 tttcaaaatgaatgttgttc-aggtttctagagacatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||| |||||||  |||| | || | |||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  32429506 tttcaaaatgagtgttgttttaggtgtttacacacatattaagaaatgcaatgattaaaagaaagagaatgattattttaccaaattatctttattaa 32429409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 4850462 - 4850526
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  4850462 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 4850526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 29400131 - 29400063
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    |||||||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||| ||||    
T  29400131 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattagttat 29400063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 19689516 - 19689452
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||| |||||||||||| |||| | |||||||| |||||||||||||||||  |||||||    
T  19689516 acatattaaaaaatgcaatgattaaaagaaagataatggttattttaccaaattattattattaa 19689452  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 43584343 - 43584407
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||| ||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  43584343 acatattaagaaatacaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 43584407  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 10344899 - 10344962
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    |||||||||||||||||||||| |||| | ||| |||| |||||||||||||||||||||||||    
T  10344899 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttatta 10344962  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 7317210 - 7317150
Alignment:
Q  306 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  7317210 attaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 7317150  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 32158728 - 32158664
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| |||||||||||||||||| |||||||    
T  32158728 acatattaagaaatgcaatgattaaaagaaagagaatggttattttaccaaattatctttattaa 32158664  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 25362767 - 25362831
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | ||| |||| || |||||||||| ||||||||||||    
T  25362767 acatattaagaaatgcaatgattaaaagaaagagaatggttgttttaccaaaatatccttattaa 25362831  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 35765877 - 35765931
Alignment:
Q  312 aaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  35765877 aaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 35765931  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 366
Target Start/End: Original strand, 3024902 - 3024962
Alignment:
Q  306 attaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||| ||| |||| | ||| |||| ||||||||||||||||||||| ||||    
T  3024902 attaagaaatgcaacgattaaaagaaagagaatggttattttaccaaattatcctttttaa 3024962  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 370
Target Start/End: Original strand, 40776576 - 40776610
Alignment:
Q  336 aatgattattttaccaaattatccttattaattat 370  Q
    ||||||||||| |||||||||||||||||||||||    
T  40776576 aatgattatttgaccaaattatccttattaattat 40776610  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 5717698 - 5717634
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||| |||||||||||| |||| | ||| |||||||||||||||||||||||||||||||    
T  5717698 acatattaaaaaatgcaatgattaaaagaaagagaatgattattttaccaaattatccttattaa 5717634  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 32022867 - 32022931
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||||| |||||| |||| | ||| ||||||||||||||||||||||| |||||||    
T  32022867 acatattaagaaatgtaatgattaaaagaaagagaatgattattttaccaaattatctttattaa 32022931  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 45423804 - 45423736
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaattat 370  Q
    ||||||||||||||| |||||| |||| | | | ||| |||||||||||||||||||||||||||||||    
T  45423804 acatattaagaaatgaaatgattaaaataaatagaattattattttaccaaattatccttattaattat 45423736  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 27986224 - 27986161
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    ||||||||||||||||||| || |||| | ||| |||| |||||||||||||||||||||||||    
T  27986224 acatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttatta 27986161  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 28072756 - 28072693
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    ||||||||||||||||||| || |||| | ||| |||| |||||||||||||||||||||||||    
T  28072756 acatattaagaaatgcaattattaaaataaagagaatggttattttaccaaattatccttatta 28072693  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 16792669 - 16792608
Alignment:
Q  305 tattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||| || | || | |||||||| ||||||||||||||||||||||||||    
T  16792669 tattaagaaatgcaattattataagaaagataatgcttattttaccaaattatccttattaa 16792608  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 43427255 - 43427317
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    ||||||||||||||||||| || |||| | ||| |||| |||||||||||||||||||||||||    
T  43427255 acatattaagaaatgcaat-attaaaataaagagaatggttattttaccaaattatccttatta 43427317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 35799378 - 35799324
Alignment:
Q  312 aaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||| |||| | ||| |||| ||||||||||||||||||||||||||    
T  35799378 aaatgcaatgattaaaagaaagagaatggttattttaccaaattatccttattaa 35799324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 14286116 - 14286053
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    |||||||||||||||||||||| |||| | |||  || ||||||||| |||||||||||||||||    
T  14286116 acatattaagaaatgcaatgattaaaagaaagaggat-attattttatcaaattatccttattaa 14286053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 22620301 - 22620365
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||| |||||||||||| |||| | ||| |||| ||||||||| ||||||||||| ||||    
T  22620301 acatattaaaaaatgcaatgattaaaagaaagagaatggttattttactaaattatccttgttaa 22620365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 17695792 - 17695856
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttattaa 366  Q
    ||||||||||||||||| |||| || | |  || |||| |||||||||||||||||| |||||||    
T  17695792 acatattaagaaatgcagtgattaagagaatgagaatggttattttaccaaattatctttattaa 17695856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 3777 - 3840
Alignment:
Q  302 acatattaagaaatgcaatgatgaaaaaatagataatgattattttaccaaattatccttatta 365  Q
    ||||| |||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||    
T  3777 acataataagaaatgcaatgattaaaagaaagaaaatgattattttaccaaattatccttatta 3840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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