View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_22 (Length: 353)
Name: NF2722_low_22
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 218 - 338
Target Start/End: Complemental strand, 39231834 - 39231714
Alignment:
| Q |
218 |
ggagagtaaaatagatgatgataaatacccaaaacaccataagggtaaaataactgatggtagatgaatcaactgtgtgactaagacatttatgagaaat |
317 |
Q |
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| T |
39231834 |
ggagagtaaaatggatgatgataaatacccaaaacaccataagggtaaaataactgatggtagatgaatcaattgtgtgactaagacatttatgagaaat |
39231735 |
T |
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| Q |
318 |
ttaaatggaagagaaggagca |
338 |
Q |
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| T |
39231734 |
ttaaatggaagagaaggagca |
39231714 |
T |
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Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 39232045 - 39231897
Alignment:
| Q |
8 |
cgaagaatatttactgagaaaaat-taatttttaactttttatattgtgaaattaatttcttaacttggaaaacaaaacatagtcaattgaaatttgaaa |
106 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39232045 |
cgaataatatttactgagaaaaaaataatttttaactttttatattgtgaaattaatttcttaacttggaaaacaaaacacagtcaattgaaatttgaaa |
39231946 |
T |
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| Q |
107 |
ggttgtattcattcattcaacaaactacaattttcattgccgtcgaatg |
155 |
Q |
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| T |
39231945 |
ggttgaattcattcattgaacaaattacaattttcattgccttcgaatg |
39231897 |
T |
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