View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_23 (Length: 353)
Name: NF2722_low_23
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 52390973 - 52391295
Alignment:
| Q |
1 |
ggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacactaccaaatt |
100 |
Q |
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| T |
52390973 |
ggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacactaccaaaaa |
52391072 |
T |
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| Q |
101 |
tannnnnnngacatgatagatggtataatgccttnnnnnnnnnnggtggtatgctattgaatata--ttgttggtcattaggaatgaaaacaagggagga |
198 |
Q |
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| T |
52391073 |
-aaaaatttgacatgatagatggtataatgccttaaaaaaaaa-ggtggtatgctattgaatagaatatattggtcattaggaatgaaaacaagggagga |
52391170 |
T |
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| Q |
199 |
gaataaatataattgttgacagaaagaggtagtagaaaataatcatcatattacaaacatggataattttctttannnnnnnncgaacatgacaaggnnn |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52391171 |
gaataaatataattgttgacagaaagaggtagtagaaaataatcatcatattacaaacatggataattttctttattttttttcgaacatgacaaggaaa |
52391270 |
T |
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| Q |
299 |
nnnntgataggaccaattcttaaaa |
323 |
Q |
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||||||||||||||||||||| |
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| T |
52391271 |
aaattgataggaccaattcttaaaa |
52391295 |
T |
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