View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_25 (Length: 341)
Name: NF2722_low_25
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 32470821 - 32471147
Alignment:
| Q |
1 |
cagagacgaatttcattctcggtactaatcacttacatattttcctttttcacgcaaacgctttattaattgttttactctcttttttatgttgaatatg |
100 |
Q |
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| T |
32470821 |
cagagacgaatttcattctcggtactaatcacttacatattttcctttttcacgcaaacgctttattaattgttttactctcttttttatgttgaatatg |
32470920 |
T |
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| Q |
101 |
gcaaagacccacagaaccattggcatggtgggacggcgaaacaatcttaggtggtagagatgtactatgcggtggtacgtggttggcttcttccaaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32470921 |
gcaaagacccacagaaccattggcatggtgggacggcgaaacaatcttaggtggtagagatgtactatgcggtggtacgtggttggcttcttctaaaaat |
32471020 |
T |
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| Q |
201 |
ggtaggttagcttttctcaccaattttagagaactccaaaacattccacagcccaacactagaggcgatctcccacttcgttttcttcaggtcatttcat |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471021 |
ggtaggttggcttttctcaccaattttagagaactccaaaacattccacagtccaacactagaggcgatctcccacttcgttttcttcaggtcatttcat |
32471120 |
T |
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| Q |
301 |
gctctctatctgtttgtcacaagttta |
327 |
Q |
| |
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|| |||||||||||||||||||||||| |
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| T |
32471121 |
gcactctatctgtttgtcacaagttta |
32471147 |
T |
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