View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_29 (Length: 307)
Name: NF2722_low_29
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_29 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 295
Target Start/End: Complemental strand, 1053773 - 1053487
Alignment:
| Q |
9 |
tattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053773 |
tattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttc |
1053674 |
T |
|
| Q |
109 |
agctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattca |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053673 |
agctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattca |
1053574 |
T |
|
| Q |
209 |
gttttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1053573 |
gttttctcatcaagaatttccattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagt |
1053487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1066128 - 1065844
Alignment:
| Q |
11 |
ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag |
110 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||| |||||||| ||||||| |
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| T |
1066128 |
ttatatttgttcagaggagcatcaagtgcaaatctctttggtaaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgttttcag |
1066029 |
T |
|
| Q |
111 |
ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt |
210 |
Q |
| |
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|||| |||||||| ||||| |||| || || ||||| | |||||| ||||| || ||||| ||||||| |||| ||| | ||| | | |||||||| |
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| T |
1066028 |
ctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagt |
1065929 |
T |
|
| Q |
211 |
tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt |
295 |
Q |
| |
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||| ||| ||| | ||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1065928 |
tttttcaccaacagttttcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagt |
1065844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 1047102 - 1046813
Alignment:
| Q |
8 |
atattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctatttt |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| |||||| ||||| | ||||||| ||||||| ||||||||| |
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| T |
1047102 |
atattatacttgtttaggggagcattaagtgcaaatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatctaccctatttt |
1047003 |
T |
|
| Q |
108 |
cagctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattc |
207 |
Q |
| |
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|||||||||||||||| || ||| |||||||||||| ||| |||||||| ||||| ||||||||| ||||||| | || ||||||| | | | |||||| |
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| T |
1047002 |
cagctatagcattgatcccgtctagtctttcatagcttccggtaaccatgaaagtgccattgaaagcctttctcactggcaccaagttgtgaagacattt |
1046903 |
T |
|
| Q |
208 |
agttttctcatcaagaatttc---cattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaag |
294 |
Q |
| |
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||||| ||||||| | |||| || || ||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||||| |
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| T |
1046902 |
tgttttatcatcaatagtttcattacttattcattctaccatatgacaatacagaataccatatttattgagggcattaaccatgtaaag |
1046813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1071855 - 1071571
Alignment:
| Q |
11 |
ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag |
110 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| || ||||||||||||||| ||| || |||||||| ||||||| |
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| T |
1071855 |
ttatacttgtttagaggagcatcaagtgcaaatctctttggcaaatctggattagctaagaacaaacgaccatatacaactaggtctgccctgttttcag |
1071756 |
T |
|
| Q |
111 |
ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt |
210 |
Q |
| |
|
|||| |||||||| ||||| |||| || || ||||| | |||||| ||||| || ||||| ||||||| |||| ||| | ||| | | |||||||| |
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| T |
1071755 |
ctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcattcagt |
1071656 |
T |
|
| Q |
211 |
tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt |
295 |
Q |
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||| ||| ||| | || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
1071655 |
tttttcaccaacagttatcattcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagt |
1071571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 294
Target Start/End: Original strand, 1640430 - 1640713
Alignment:
| Q |
11 |
ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag |
110 |
Q |
| |
|
||||||||||| |||||||||| || || ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| | |||||||| |
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| T |
1640430 |
ttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttcaa |
1640529 |
T |
|
| Q |
111 |
ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt |
210 |
Q |
| |
|
|||| |||| || |||||||||| ||||||||| | ||| ||||||||||||||||| | ||||| |||| ||||||||| | | |||||||| |
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| T |
1640530 |
ctatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggcttttctcattggcaccaagctgtgaagacattcaac |
1640629 |
T |
|
| Q |
211 |
tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaag |
294 |
Q |
| |
|
||| ||| || | ||| |||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||||||||| |
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| T |
1640630 |
tttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaag |
1640713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 1044515 - 1044333
Alignment:
| Q |
9 |
tattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttc |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | || |||||||||||||||| | | |||||||||| | ||||| |
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| T |
1044515 |
tattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaactacaagatctgccttgttttc |
1044416 |
T |
|
| Q |
109 |
agctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacacca |
191 |
Q |
| |
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||||||||||| ||| || |||||||| ||||||||||| | | |||| |||| ||||||||| ||||||| |||| ||||| |
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| T |
1044415 |
agctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttctcattggcacca |
1044333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 1034114 - 1033842
Alignment:
| Q |
23 |
agaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcattga |
122 |
Q |
| |
|
|||||||| || |||||||||||||| || ||||||||||| | || |||||||||||||||| ||| ||||||||||||||| || ||||||||||||| |
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| T |
1034114 |
agaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatctgccctattatctgctatagcattga |
1034015 |
T |
|
| Q |
123 |
ttccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagttttctcatcaag |
222 |
Q |
| |
|
| ||||||||||| ||||| ||||| | |||||| ||||| ||||||||| ||||||| || | ||||| || ||| | | |||| | | |||||| |
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|
| T |
1034014 |
tcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgtaagggctttcaatcgtttcatcatt |
1033915 |
T |
|
| Q |
223 |
aatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt |
295 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||| || |||||||||||||| |||||||||||| |
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| T |
1033914 |
tgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagt |
1033842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 1059036 - 1058752
Alignment:
| Q |
11 |
ttatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcag |
110 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||||| ||| ||| |||| ||||||||||| |
|
|
| T |
1059036 |
ttatacttgtttagaggagcattaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcag |
1058937 |
T |
|
| Q |
111 |
ctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctataatgacattcagt |
210 |
Q |
| |
|
|||| |||||||| ||||| | || || || ||||| | | ||| ||||| || ||||| ||||||| || | ||| | ||| | | |||||| | |
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|
| T |
1058936 |
ctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaat |
1058837 |
T |
|
| Q |
211 |
tttctcatcaagaatttccattcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt |
295 |
Q |
| |
|
| | |||| || | ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1058836 |
tctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagt |
1058752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 1044294 - 1044229
Alignment:
| Q |
230 |
attcttggttccaccatttgacaataaagaataccatatttattgagggcattcaccatataaagt |
295 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| || |||||||||||||| ||||||| |||| |
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| T |
1044294 |
attcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagt |
1044229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
| Q |
37 |
tgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattttcagctatagcatt |
120 |
Q |
| |
|
||||||||||||||| |||| |||||||| || |||| ||||||||||| ||| |||||||||| ||||||| ||||||||||| |
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|
| T |
65937 |
tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt |
65854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 12121338 - 12121407
Alignment:
| Q |
37 |
tgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatctgccctattt |
106 |
Q |
| |
|
|||||||||| |||| ||||||||||||| || |||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
12121338 |
tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctgccttattt |
12121407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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