View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_low_30 (Length: 306)

Name: NF2722_low_30
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_low_30
NF2722_low_30
[»] chr1 (4 HSPs)
chr1 (128-306)||(1953301-1953478)
chr1 (128-271)||(1968417-1968560)
chr1 (201-271)||(47580079-47580148)
chr1 (40-68)||(12141643-12141671)
[»] chr6 (2 HSPs)
chr6 (128-268)||(6950097-6950237)
chr6 (164-271)||(19698253-19698360)
[»] chr8 (4 HSPs)
chr8 (129-271)||(4327273-4327414)
chr8 (156-271)||(21185679-21185794)
chr8 (156-273)||(1789304-1789421)
chr8 (39-68)||(39655689-39655718)
[»] chr3 (7 HSPs)
chr3 (130-271)||(11634583-11634724)
chr3 (147-271)||(42258191-42258314)
chr3 (129-253)||(11641110-11641234)
chr3 (147-271)||(42254069-42254194)
chr3 (147-233)||(19930549-19930635)
chr3 (225-271)||(19935631-19935677)
chr3 (147-189)||(19935590-19935632)
[»] chr2 (4 HSPs)
chr2 (151-271)||(2590086-2590206)
chr2 (166-274)||(34564339-34564447)
chr2 (164-273)||(18739519-18739628)
chr2 (235-271)||(35969734-35969770)
[»] chr7 (3 HSPs)
chr7 (177-271)||(39426629-39426723)
chr7 (164-267)||(11673603-11673706)
chr7 (138-241)||(3850967-3851070)
[»] scaffold0014 (2 HSPs)
scaffold0014 (164-271)||(86622-86729)
scaffold0014 (180-271)||(82233-82314)
[»] chr4 (1 HSPs)
chr4 (39-68)||(44643550-44643579)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 1953478 - 1953301
Alignment:
Q  128 gcatcaattgttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  1953478 gcatcaattgttacaaaactaaatatataataaatttgacaaatgagactttgacttagtaaatatcacatggttaaatcaacaaaaaataatgaacaa- 1953380  T
Q  228 ttttaataacttttgaaatataatatcaacttaaaaatacaacagtttgtagctcgggcatgacatgagttaacacact 306  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1953379 ttttaataacttttaaaatataatatcaacttaaaaatacaacaatttgtagctcgggcatgacatgagttaacacact 1953301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 1968560 - 1968417
Alignment:
Q  128 gcatcaattgttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaac 227  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1968560 gcatcaattgttacaaaactaaatataaaataaatttgataaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaac 1968461  T
Q  228 ttttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1968460 ttttaataacttttgaaatataatatcaacttaaaaatacaaca 1968417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 47580148 - 47580079
Alignment:
Q  201 ttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    ||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  47580148 ttaaatcaacaaaaa-taacaaacaatttttaataacttttgaaatataatatcaacttaaaaataaaaca 47580079  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 12141643 - 12141671
Alignment:
Q  40 gttaagtaacctgaggcgtgacatagtca 68  Q
    |||||||||||||||||||||||||||||    
T  12141643 gttaagtaacctgaggcgtgacatagtca 12141671  T

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Target: chr6 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 128 - 268
Target Start/End: Original strand, 6950097 - 6950237
Alignment:
Q  128 gcatcaattgttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaac 227  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6950097 gcatcaattgatacaaaactaaatataaaataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaac 6950196  T
Q  228 ttttaataacttttgaaatataatatcaacttaaaaataca 268  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  6950197 ttttaataacttttgaaatataatatcaactcaaaaataca 6950237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 19698253 - 19698360
Alignment:
Q  164 tgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaa 263  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  19698253 tgacaaataaggctttgactaagtaaatataacatggttaaatcaacaacaaataataaacaacttttaataacttttgaaatataatatcaactcaaaa 19698352  T
Q  264 atacaaca 271  Q
    ||||||||    
T  19698353 atacaaca 19698360  T

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Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 129 - 271
Target Start/End: Original strand, 4327273 - 4327414
Alignment:
Q  129 catcaattgttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaact 228  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4327273 catcaattgttacaaaactaaatataaaataaatttggcaaataaggttttgactaagtaaatatcacatggttaaatcaac-aaaaataatgaacaact 4327371  T
Q  229 tttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  4327372 tttaataacctctgaaatataatatcaacttaaaaatacaaca 4327414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 21185679 - 21185794
Alignment:
Q  156 aataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatca 255  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21185679 aataaatatgacaaataaggttttgactaagtaaatatcacatggttaaatcaacaataaataatgaacaacttttaataacttttgaaatataatatca 21185778  T
Q  256 acttaaaaatacaaca 271  Q
    ||| ||||||||||||    
T  21185779 actcaaaaatacaaca 21185794  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 1789304 - 1789421
Alignment:
Q  156 aataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatca 255  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    
T  1789304 aataaatgtgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaacaaacaataaacaacttttaataacttttgaaatataatatca 1789403  T
Q  256 acttaaaaatacaacagt 273  Q
    ||| ||||||||||||||    
T  1789404 actcaaaaatacaacagt 1789421  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 39655689 - 39655718
Alignment:
Q  39 tgttaagtaacctgaggcgtgacatagtca 68  Q
    ||||||||||||||||||||||||||||||    
T  39655689 tgttaagtaacctgaggcgtgacatagtca 39655718  T

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Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 11634583 - 11634724
Alignment:
Q  130 atcaattgttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaactt 229  Q
    |||||| |||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  11634583 atcaatagttagaaaaataaatatataataaatttgataaatagggctttgactaagtaaatatcacatgattaaatcaacaacaaataatgaacaactt 11634682  T
Q  230 ttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  11634683 ttaataacttttgaaatataatatcaactcaaaaatacaaca 11634724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 147 - 271
Target Start/End: Original strand, 42258191 - 42258314
Alignment:
Q  147 taaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaat 246  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  42258191 taaatataaaataaatttgataaataaggctttgactaggtaaatatcacatggttaaattaacaataaataatgaacaacttttaataacttttgaaat 42258290  T
Q  247 ataatatcaacttaaaaatacaaca 271  Q
     |||||| |||| ||||||||||||    
T  42258291 gtaatat-aactcaaaaatacaaca 42258314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 129 - 253
Target Start/End: Original strand, 11641110 - 11641234
Alignment:
Q  129 catcaattgttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaact 228  Q
    ||||||| ||||||||| ||| |||| |||||||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||||||||||||||    
T  11641110 catcaatagttacaaaaataattataaaataaatttgacaaataacgctttgactaaataaatatcacattgataaatcaacaacaaataatgaacaact 11641209  T
Q  229 tttaataacttttgaaatataatat 253  Q
    |||||||||||| ||||||||||||    
T  11641210 tttaataactttggaaatataatat 11641234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 147 - 271
Target Start/End: Original strand, 42254069 - 42254194
Alignment:
Q  147 taaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataac-ttttgaaa 245  Q
    |||||||| ||||||||||| ||| |||||||||||||  ||||||||||||||||||||  |||| |||||||||||||||||||||||| ||||||||    
T  42254069 taaatataaaataaatttgataaagaaggctttgactagataaatatcacatggttaaattcacaataaataatgaacaacttttaataactttttgaaa 42254168  T
Q  246 tataatatcaacttaaaaatacaaca 271  Q
    ||||||||||||| ||||||||||||    
T  42254169 tataatatcaactcaaaaatacaaca 42254194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 19930549 - 19930635
Alignment:
Q  147 taaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaa 233  Q
    |||||||| ||||||||||| |||| ||||| |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  19930549 taaatataaaataaatttgataaattaggctatgactaggtaaatatcacatggttaaattaacaataaataatgaacaacttttaa 19930635  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 19935631 - 19935677
Alignment:
Q  225 aacttttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  19935631 aacttttaataacttttgaaatataatatcaactcaaaaatacaaca 19935677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 19935590 - 19935632
Alignment:
Q  147 taaatatataataaatttgacaaataaggctttgactaagtaa 189  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||    
T  19935590 taaatataaaataaatttgataaataaggctttgactaggtaa 19935632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 2590206 - 2590086
Alignment:
Q  151 tatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataa 250  Q
    |||| ||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  2590206 tataaaataattgtgacaaataaggttttgactaagtaaatatcacatggttaaatcaacaacaagtaatgaacaacttttaataacttttgaaatataa 2590107  T
Q  251 tatcaacttaaaaatacaaca 271  Q
    |||||||| ||||||||||||    
T  2590106 tatcaactcaaaaatacaaca 2590086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 166 - 274
Target Start/End: Complemental strand, 34564447 - 34564339
Alignment:
Q  166 acaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaaat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||    
T  34564447 acaaataaggctttgactaagtaaatatcacatggttaaatcaacaacaaataataaacaacttttaataacttttaaaatataatatcaactcaaaaat 34564348  T
Q  266 acaacagtt 274  Q
    |||||||||    
T  34564347 acaacagtt 34564339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 164 - 273
Target Start/End: Original strand, 18739519 - 18739628
Alignment:
Q  164 tgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaa 263  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||    
T  18739519 tgacaaataaggttttgactaagtaaatatcacatggttaaatcaacaacaaataataaacaacttttaataacttttaaaatataatatcaactcaaaa 18739618  T
Q  264 atacaacagt 273  Q
     |||||||||    
T  18739619 ctacaacagt 18739628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 35969734 - 35969770
Alignment:
Q  235 aacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35969734 aacttttgaaatataatatcaactgaaaaatacaaca 35969770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 177 - 271
Target Start/End: Original strand, 39426629 - 39426723
Alignment:
Q  177 tttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39426629 tttgattaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaaatacaaca 39426723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 164 - 267
Target Start/End: Complemental strand, 11673706 - 11673603
Alignment:
Q  164 tgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaa 263  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  11673706 tgacaaataagactttgactaagtaaatatcacatggttaaatcaacaacaaataataaacaaattttaataacttttgaaatataatatcaactcaaaa 11673607  T
Q  264 atac 267  Q
    ||||    
T  11673606 atac 11673603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 3850967 - 3851070
Alignment:
Q  138 ttacaaaactaaatatataataaatttgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataac 237  Q
    |||||||| ||| |||| ||||||||||| ||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||| |||||||||    
T  3850967 ttacaaaaataattataaaataaatttgataaataagactttgactaagtaaatatcacttgattaaatcaacaacaaataatgaacaacatttaataac 3851066  T
Q  238 tttt 241  Q
    ||||    
T  3851067 tttt 3851070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 164 - 271
Target Start/End: Complemental strand, 86729 - 86622
Alignment:
Q  164 tgacaaataaggctttgactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaa 263  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  86729 tgacaagtaaggctttgactaagtaaatatcacatggttaaatcactaacaaataataaacaacttttaataacttttgaaatataatatcaactcaaaa 86630  T
Q  264 atacaaca 271  Q
    ||||||||    
T  86629 atacaaca 86622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 82314 - 82233
Alignment:
Q  180 gactaagtaaatatcacatggttaaatcaacaaaaaataatgaacaacttttaataacttttgaaatataatatcaacttaaaaatacaaca 271  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||          |||||||||||||||||||||||| ||||||||||||    
T  82314 gactaagtaaatatcacatcgttaaatcaacaacaaataataaac----------aacttttgaaatataatatcaactcaaaaatacaaca 82233  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 44643579 - 44643550
Alignment:
Q  39 tgttaagtaacctgaggcgtgacatagtca 68  Q
    ||||||||||||||||||||||||||||||    
T  44643579 tgttaagtaacctgaggcgtgacatagtca 44643550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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