View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2722_low_38 (Length: 270)

Name: NF2722_low_38
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2722_low_38
NF2722_low_38
[»] chr3 (3 HSPs)
chr3 (16-258)||(12531828-12532070)
chr3 (118-245)||(52134459-52134585)
chr3 (113-206)||(10355295-10355388)
[»] scaffold0096 (1 HSPs)
scaffold0096 (16-258)||(31683-31925)
[»] chr7 (4 HSPs)
chr7 (113-245)||(6841237-6841368)
chr7 (123-209)||(11646975-11647061)
chr7 (141-251)||(13764650-13764760)
chr7 (124-177)||(39704377-39704430)
[»] scaffold0475 (1 HSPs)
scaffold0475 (114-245)||(6450-6581)
[»] chr6 (2 HSPs)
chr6 (114-245)||(4659153-4659284)
chr6 (141-258)||(27446927-27447044)
[»] chr2 (2 HSPs)
chr2 (113-248)||(924871-925007)
chr2 (123-209)||(2040429-2040515)
[»] chr5 (1 HSPs)
chr5 (147-258)||(22772072-22772183)
[»] scaffold0003 (2 HSPs)
scaffold0003 (141-258)||(33686-33803)
scaffold0003 (141-258)||(40314-40431)
[»] chr1 (1 HSPs)
chr1 (137-209)||(23597999-23598071)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 12532070 - 12531828
Alignment:
Q  16 atttcaattctattgatattggtgtaacattgtttctaatgatggacaatggatctttaaaaataggattatgttcactttaactcttactcaaatgttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  12532070 atttcaattctattgatattggtgtaacattgtttctaatgatggacgatggatctttaaaaataggattatgttcacttcaactcttgctcaaatgttt 12531971  T
Q  116 ggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnnnn 215  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||          
T  12531970 gggaaatgatttattttatattaaattaaatgtattaataacaagattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccaaaaaa 12531871  T
Q  216 ntagaatgagaaagattaatcgttaaaaaacaatagcggttca 258  Q
     ||||| ||||||||||||||||||||||||||||||| ||||    
T  12531870 atagaacgagaaagattaatcgttaaaaaacaatagcgcttca 12531828  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 52134459 - 52134585
Alignment:
Q  118 aaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnnnnnt 217  Q
    |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||       |    
T  52134459 aaaaagatttattttatattaaat-aaatgtattaataacaagattcataaattgacaaaaaagtaattgtttacctcttataaattgaaccaaaaaaat 52134557  T
Q  218 agaatgagaaagattaatcgttaaaaaa 245  Q
    |||||||| ||||||| |||||||||||    
T  52134558 agaatgaggaagattattcgttaaaaaa 52134585  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 10355388 - 10355295
Alignment:
Q  113 tttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaataga 206  Q
    ||||||||| |||||||||| ||||||||||||||||||||| ||| || |||||||||||  |||||||||| || || ||||||||||||||    
T  10355388 tttggaaaaagatttattttgtattaaattaaatgtattaatgacaagactcataaattgaacaaaaagtaatcgtatatctcttataaataga 10355295  T

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Target: scaffold0096 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 31683 - 31925
Alignment:
Q  16 atttcaattctattgatattggtgtaacattgtttctaatgatggacaatggatctttaaaaataggattatgttcactttaactcttactcaaatgttt 115  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  31683 atttcaattctattcatactggtgtaacattgtttctaatgatggacaatggatctttaaaaatagtattatgttcacttcaacacttactcaaatgttt 31782  T
Q  116 ggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnnnn 215  Q
    || ||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||||| ||||          
T  31783 gggaaatgatttattttatattaaattaaatgtattaataacaaaatttataaattgacaaaaaagtaattgtttacttcttataaataaaaccaaaaaa 31882  T
Q  216 ntagaatgagaaagattaatcgttaaaaaacaatagcggttca 258  Q
     |||||  ||||||||||||| |||||||||||||||| ||||    
T  31883 atagaacaagaaagattaatcattaaaaaacaatagcgcttca 31925  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 113 - 245
Target Start/End: Original strand, 6841237 - 6841368
Alignment:
Q  113 tttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnn 212  Q
    ||||| ||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||       
T  6841237 tttgggaaaagatttattttttattaaat-aaatgtattaataacaagattcataaattgacaaaaaagtaattgtttacctcttataaattgaaccaaa 6841335  T
Q  213 nnnntagaatgagaaagattaatcgttaaaaaa 245  Q
        ||||| ||||||||||| |||||||||||    
T  6841336 aaaatagaacgagaaagattattcgttaaaaaa 6841368  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 11647061 - 11646975
Alignment:
Q  123 gatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc 209  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  11647061 gatttattttgtattaaattaaatgcattaataacaagattcataaattgaaaaaaaagaaattgtttaccgcttataaatagaacc 11646975  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 13764650 - 13764760
Alignment:
Q  141 ttaaatgtattaataacacgattcataaattgacaaaa-aagtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt 239  Q
    |||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |       || || |||||||||||||||||    
T  13764650 ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaaatataacgagaaagattaatcgtt 13764748  T
Q  240 aaaaaacaatag 251  Q
    ||||||||||||    
T  13764749 aaaaaacaatag 13764760  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 39704430 - 39704377
Alignment:
Q  124 atttattttatattaaattaaatgtattaataacacgattcataaattgacaaa 177  Q
    ||||||||| |||||| |||||||||||  ||||| ||||||||||||||||||    
T  39704430 atttattttgtattaagttaaatgtattggtaacaagattcataaattgacaaa 39704377  T

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Target: scaffold0475 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 6581 - 6450
Alignment:
Q  114 ttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnn 213  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||        
T  6581 ttgggaaaagatttattttgtattaaattaaatgtattaataacaagattcataaattgataaaagagtaattgtttacctcttataaattgaaccaaaa 6482  T
Q  214 nnntagaatgagaaagattaatcgttaaaaaa 245  Q
       ||||||||||||||||| | |||||||||    
T  6481 aaatagaatgagaaagattatttgttaaaaaa 6450  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 114 - 245
Target Start/End: Complemental strand, 4659284 - 4659153
Alignment:
Q  114 ttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaaccnnnn 213  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||        
T  4659284 ttgggaaaagatttattttgtattaaattaaatgtattaataacaagattcataaattgataaaagagtaattgtttacctcttataaattgaaccaaaa 4659185  T
Q  214 nnntagaatgagaaagattaatcgttaaaaaa 245  Q
       ||||||||||||||||| | |||||||||    
T  4659184 aaatagaatgagaaagattatttgttaaaaaa 4659153  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 27446927 - 27447044
Alignment:
Q  141 ttaaatgtattaataacacgattcataaattgacaaaa-aagtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt 239  Q
    |||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |       |  ||  ||||||||||||||||    
T  27446927 ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaattgtaacaagaaagattaatcgtt 27447025  T
Q  240 aaaaaacaatagcggttca 258  Q
    |||||||||||||| ||||    
T  27447026 aaaaaacaatagcgcttca 27447044  T

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Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 113 - 248
Target Start/End: Original strand, 924871 - 925007
Alignment:
Q  113 tttggaaaatgatttattttatattaaattaaatgtattaataacacgattcataaattgac-aaaaaagtaattgtttacctcttataaatagaaccnn 211  Q
    |||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||       
T  924871 tttgaaaaaagatttattttgtattaaattaaatgtattaataacaagattcataaattgacaaaaaaaataattgtttacctcttataaatagaactaa 924970  T
Q  212 nnnnntagaatgagaaagattaatcgttaaaaaacaa 248  Q
         ||||| |||||| |||||||||||| ||||||    
T  924971 aaaagtagaacgagaaatattaatcgttaagaaacaa 925007  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 2040515 - 2040429
Alignment:
Q  123 gatttattttatattaaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc 209  Q
    |||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  2040515 gatttattttgtattaaattaaatgcattaataacaagattcataaattgacaaaaaagaaattgtttaccgcttataaatagaacc 2040429  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 22772183 - 22772072
Alignment:
Q  147 gtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc-nnnnnnntagaatgagaaagattaatcgttaaaaaa 245  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||    
T  22772183 gtattaataacaagattcgtaaattgacaaaaa-gtaattgtttacctcttataaatagaaccaaaaaaaatagaacgagaaagattaatcgttaaaaaa 22772085  T
Q  246 caatagcggttca 258  Q
    |||||||| ||||    
T  22772084 caatagcgcttca 22772072  T

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Target: scaffold0003 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 33803 - 33686
Alignment:
Q  141 ttaaatgtattaataacacgattcataaattgacaaaaaa-gtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt 239  Q
    |||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |       || || |||||||||||||||||    
T  33803 ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaaatataacgagaaagattaatcgtt 33705  T
Q  240 aaaaaacaatagcggttca 258  Q
    |||||||||||||| ||||    
T  33704 aaaaaacaatagcgcttca 33686  T

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Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 258
Target Start/End: Complemental strand, 40431 - 40314
Alignment:
Q  141 ttaaatgtattaataacacgattcataaattgacaaaaaa-gtaattgtttacctcttataaatagaaccnnnnnnntagaatgagaaagattaatcgtt 239  Q
    |||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |       |  ||  ||||||||||||||||    
T  40431 ttaaatttattactaacaagattcataaattgacaaaaaaagtaattgtttacctcttataaatagaa-caaaaaattgtaacaagaaagattaatcgtt 40333  T
Q  240 aaaaaacaatagcggttca 258  Q
    |||||||||||||| ||||    
T  40332 aaaaaacaatagcgcttca 40314  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 23598071 - 23597999
Alignment:
Q  137 taaattaaatgtattaataacacgattcataaattgacaaaaaagtaattgtttacctcttataaatagaacc 209  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  23598071 taaattaaacgtattaataacaagattcataaattgacaaaaaagtaattatttacctcttataaataaaacc 23597999  T

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