View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_40 (Length: 265)
Name: NF2722_low_40
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_40 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 1952957 - 1953208
Alignment:
| Q |
13 |
aaaatggacgcttgcaacaaacaagtaaaaagctaagaaatttgccgagggcgatttggtttggaagtttgtcctaccaattagaacgaaagatcctaag |
112 |
Q |
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| T |
1952957 |
aaaatgaacgcttgcaacaaacaagtaaaaagctaagaa-tttgccgagggcgatttggtttggaagtctgtcctaccaattagaacgaaagatcctaag |
1953055 |
T |
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| Q |
113 |
tatggga-gtggtcaccaaattgggaaggagattttgttattagcaaggtgtatgacaatcatataaattaaacatggcatgtttaaaattcacaacatt |
211 |
Q |
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| T |
1953056 |
tatgggaagcggtcaccaaattgggaag-agatttcgttattagcaaggtgtatgatgatcatataaattaaacatcgcatgtttaaaattcacaagatt |
1953154 |
T |
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| Q |
212 |
ttcaattttaggtatgcactctccattcaagagtaatataaatccacatgttta |
265 |
Q |
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| T |
1953155 |
ttcaattttaggtatgcactctccgttcaagagtaatataaatccacatgttta |
1953208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 1996137 - 1996386
Alignment:
| Q |
13 |
aaaatggacgcttgcaacaaacaagtaaaaagctaagaaatttgccgagggcgatttggtttggaagtttgtcctaccaattagaacgaaagatcctaag |
112 |
Q |
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| T |
1996137 |
aaaatgaacacttacaacaaacaagtacaaagctaagaaatttgttgagggcggtttggtttcgaagattgtcctaccaatcagaacgaaagatcctaag |
1996236 |
T |
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| Q |
113 |
tatggg-agtggtcaccaaattgggaaggagattttgttattagcaaggtgtatgacaatcatataaattaaacatggcatgtttaaaattcacaacatt |
211 |
Q |
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| T |
1996237 |
tatgggaagcggtcaccaaattgggaaggagatttcgttattagcaaggtgtatgacgatcatataaattaaacatcgca----tatatgccacaatatt |
1996332 |
T |
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| Q |
212 |
ttcaattttaggtatgcactctccattcaagagtaatataaatccacatgttta |
265 |
Q |
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| T |
1996333 |
ttcaattttaggcatgcactctccattcaagagtaatataaatccacatgttta |
1996386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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