View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_41 (Length: 255)
Name: NF2722_low_41
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 6261852 - 6262088
Alignment:
| Q |
11 |
aatgagttgtccctcaatttcagctagggtttttccaaacttcttgaaggctgctatggcatttgtatcagaagtccaatactcagcactgtctctttgt |
110 |
Q |
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| T |
6261852 |
aatgagttgtccctcaatttcagctagggtttttccaaacttcttgaaggctgctatggcatttgtatcagaagtccaatactcagcactgtctctttgt |
6261951 |
T |
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| Q |
111 |
ccaaggtagtactcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctcaagtaggcct |
210 |
Q |
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| T |
6261952 |
ccaaggtagtactcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctcaagtaggcct |
6262051 |
T |
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| Q |
211 |
tctgagggttggtagctagctcattatactcagtagt |
247 |
Q |
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| T |
6262052 |
tctgagggttggtagctagctcattatactcggtagt |
6262088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 6455969 - 6456064
Alignment:
| Q |
122 |
ctcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctcaagtaggccttctgagg |
217 |
Q |
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| T |
6455969 |
ctcatcagaagcatgtcttgacaatatctcaatcacagaaagatcaatgagggtctgaaactttggtgtaatagttctcaaatacgccttttgagg |
6456064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 42689887 - 42689772
Alignment:
| Q |
102 |
tctctttgtccaaggtagtactcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctca |
201 |
Q |
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| T |
42689887 |
tctctttgtccaaggtaaacttcatcagaagcatgtcttgacaatatttctatcactgaaaggtcaataagagtctgaaacttcggcgtgattgttctca |
42689788 |
T |
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| Q |
202 |
agtaggccttctgagg |
217 |
Q |
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| T |
42689787 |
agtaagccttttgagg |
42689772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 42691982 - 42692070
Alignment:
| Q |
123 |
tcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctcaagtaggcctt |
211 |
Q |
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| T |
42691982 |
tcatcagaagcgtgccttgacaatatttctataacggaaaggtcgataagcgtctgaaacttcggtgtaattgtcttcaagtatgcctt |
42692070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 9606526 - 9606416
Alignment:
| Q |
110 |
tccaaggtagtactcatcagaagcatgcctcgacaatatttctatgactgaaagatcaatcagcgtttgaaacttcggtgtaattgttctcaagtaggcc |
209 |
Q |
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| T |
9606526 |
tccaaggtagatttcatcagaagcatgtctagacaatatctcaatcacagaaagatcaattagggtttgatattttggtgtaattgttctcaaatatgcc |
9606427 |
T |
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| Q |
210 |
ttctgagggtt |
220 |
Q |
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| T |
9606426 |
ttttgagggtt |
9606416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 46708974 - 46709030
Alignment:
| Q |
98 |
actgtctctttgtccaaggtagtactcatcagaagcatgcctcgacaatatttctat |
154 |
Q |
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| T |
46708974 |
actgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctat |
46709030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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